Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05486 and RBAM_033160

See DNA alignment / Visit BSNT_05486 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence pep-align/BSNT_05486___alsD.1.9828.seq
#    -bsequence pep-align/RBAM_033160___alsD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05486___alsD-RBAM_033160___alsD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05486___alsD-RBAM_033160___alsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: RBAM_033160___alsD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     210/255 (82.4%)
# Similarity:   236/255 (92.5%)
# Gaps:           0/255 ( 0.0%)
# Score: 1157.0
# 
#
#=======================================

BSNT_05486___      1 MKRESNIQVLRRGQKDQPVSQIYQVSTMTSLLDGVYDGDFELSEIPKYGD     50
                     ||..|:|.::.||:|..|..||||||||||||||||||||::::|||:||
RBAM_033160__      1 MKNASDIHMMSRGEKGSPEDQIYQVSTMTSLLDGVYDGDFDMADIPKFGD     50

BSNT_05486___     51 FGIGTFNKLDGELIGFDGEFYRLRSDGTATPVQNGDRSPFCSFTFFTPDM    100
                     ||||||||||||||||||||||||.|||||||:.||.|||||||||||||
RBAM_033160__     51 FGIGTFNKLDGELIGFDGEFYRLRGDGTATPVKGGDLSPFCSFTFFTPDM    100

BSNT_05486___    101 THKIDAKMTREDFEKEINSMLPSRNLFYAIRIDGLFKKVQTRTVELQEKP    150
                     ||.||.:||||:||:||.|:|||:|||||||:||:||||||||||.||||
RBAM_033160__    101 THTIDGEMTREEFEQEIASLLPSKNLFYAIRLDGVFKKVQTRTVERQEKP    150

BSNT_05486___    151 YVPMVEAVKTQPIFNFDNVRGTIVGFLTPAYANGIAVSGYHLHFIDEGRN    200
                     ||||:|||||||:||||:::|||.||.||.||||||||||||||||||||
RBAM_033160__    151 YVPMIEAVKTQPVFNFDDIQGTIAGFWTPGYANGIAVSGYHLHFIDEGRN    200

BSNT_05486___    201 SGGHVFDYVLEDCTVTISQKMNMNLRLPNTADFFNANLDNPDFAKDIETT    250
                     |||||||||::||.|||||||||||:|||||||||||||||:||||||||
RBAM_033160__    201 SGGHVFDYVIKDCKVTISQKMNMNLKLPNTADFFNANLDNPNFAKDIETT    250

BSNT_05486___    251 EGSPE    255
                     |||||
RBAM_033160__    251 EGSPE    255


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.