Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05486 and RBAM_033160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05486___alsD.1.9828.seq
# -bsequence dna-align/RBAM_033160___alsD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05486___alsD-RBAM_033160___alsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05486___alsD-RBAM_033160___alsD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: RBAM_033160___alsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 771
# Identity: 604/771 (78.3%)
# Similarity: 604/771 (78.3%)
# Gaps: 6/771 ( 0.8%)
# Score: 2316.0
#
#
#=======================================
BSNT_05486___ 1 ATGAAACGAGAAAGCAACATTCAAGTGCTCAGACGCGGTCAAAAA-GATC 49
||||||...|.||||.||||.||..||.|.||.|||||..||||| |.||
RBAM_033160__ 1 ATGAAAAACGCAAGCGACATCCATATGATGAGCCGCGGAGAAAAAGGCTC 50
BSNT_05486___ 50 AGCCTGTGAGCCAGATTTATCAAGTATCAACAATGACTTCTCTATTAGAC 99
| ||||.|...|||||.||||||||.|||||||||||.|||||..|.|||
RBAM_033160__ 51 A-CCTGAGGATCAGATCTATCAAGTCTCAACAATGACATCTCTGCTGGAC 99
BSNT_05486___ 100 GGAGTATATGACGGAGATTTTGAACTGTCAGAGATTCCGAAATATGGAGA 149
|||||||||||||||||||||||..||.|.||.||||||||.|..||.||
RBAM_033160__ 100 GGAGTATATGACGGAGATTTTGATATGGCTGACATTCCGAAGTTCGGTGA 149
BSNT_05486___ 150 CTTCGGTATCGGAACCTTTAACAAGCTTGACGGAGAGCTGATTGGGTTTG 199
.|||||.|||||.||.||.||.||.||.|||||.||..|.||.||.||||
RBAM_033160__ 150 TTTCGGAATCGGCACGTTCAATAAACTGGACGGCGAATTAATCGGATTTG 199
BSNT_05486___ 200 ACGGCGAATTTTACCGTCTCCGTTCAGACGGAACCGCGACACCGGTCCAA 249
||||.||||||||||||||.||....||||||||.||.||.||.||..||
RBAM_033160__ 200 ACGGAGAATTTTACCGTCTGCGCGGCGACGGAACGGCTACGCCTGTTAAA 249
BSNT_05486___ 250 AACGGGGATCGTTCTCCGTTCTGTTCATTTACGTTCTTTACACCGGACAT 299
..|||.||.|..||.||.|||||.|||||.||.||.||.||.|||||.||
RBAM_033160__ 250 GGCGGAGACCTGTCACCATTCTGCTCATTCACATTTTTCACGCCGGATAT 299
BSNT_05486___ 300 GACGCACAAAATTGA-TGCGAAAATGACACGCGAAGACTTTGAAAAAGAG 348
||||||.|..||.|| .||| |||||||.||.|||||.||.||..|.||.
RBAM_033160__ 300 GACGCATACGATCGACGGCG-AAATGACCCGTGAAGAATTCGAGCAGGAA 348
BSNT_05486___ 349 ATCAACAGCATGCTGCCAAGCAGAAACTTATTTTATGCAATTCGTATTGA 398
|||..||||.|.|||||.||.|.|||||||||||||||.||.|||.|.||
RBAM_033160__ 349 ATCGCCAGCCTTCTGCCTAGTAAAAACTTATTTTATGCGATCCGTTTGGA 398
BSNT_05486___ 399 CGGATTGTTTAAAAAGGTGCAGACAAGAACGGTAGAACTTCAAGAAAAAC 448
|||..|.|||||||||||||||||||||||||||||||..||.||.||||
RBAM_033160__ 399 CGGCGTATTTAAAAAGGTGCAGACAAGAACGGTAGAACGCCAGGAGAAAC 448
BSNT_05486___ 449 CTTACGTGCCAATGGTTGAAGCGGTCAAAACACAGCCGATTTTCAACTTC 498
|.|||||.||.|||.|.||||||||.|||||||||||..|.||||||||.
RBAM_033160__ 449 CGTACGTTCCGATGATCGAAGCGGTAAAAACACAGCCTGTGTTCAACTTT 498
BSNT_05486___ 499 GACAAC-GTGAGAGGAACAATCGTAGGTTTCTTGACACCAGCTTATGCAA 547
|||.|| .|.|| ||.|||||||..||.||||.|||.||.|.|||.||||
RBAM_033160__ 499 GACGACATTCAG-GGTACAATCGCCGGCTTCTGGACGCCGGGTTACGCAA 547
BSNT_05486___ 548 ACGGAATCGCCGTTTCAGGCTATCACCTGCACTTCATTGACGAAGGACGC 597
||||.|||||.|||||.||.||||||||||||||||||||.|||||||||
RBAM_033160__ 548 ACGGCATCGCTGTTTCCGGATATCACCTGCACTTCATTGATGAAGGACGC 597
BSNT_05486___ 598 AATTCAGGCGGACACGTTTTTGACTATGTGCTTGAGGATTGCACGGTTAC 647
|||||.|||||||||||.|||||||||||..||.|.|||||.|..||.||
RBAM_033160__ 598 AATTCCGGCGGACACGTATTTGACTATGTCATTAAAGATTGTAAAGTGAC 647
BSNT_05486___ 648 GATTTCTCAAAAAATGAACATGAATCTCAGACTTCCGAACACAGCGGATT 697
||||||||||||||||||.|||||.||||..||||||||.||.|||||.|
RBAM_033160__ 648 GATTTCTCAAAAAATGAATATGAACCTCAAGCTTCCGAATACGGCGGACT 697
BSNT_05486___ 698 TCTTTAATGCGAATCTGGATAACCCTGATTTTGCGAAAGATATCGAAACA 747
|.||.||.||.|||.|.|||||.||..||||||||||.||||||||||||
RBAM_033160__ 698 TTTTCAACGCAAATTTAGATAATCCGAATTTTGCGAAGGATATCGAAACA 747
BSNT_05486___ 748 ACTGAAGGAAGCCCTGAATAA 768
||.|||||||||||.||||||
RBAM_033160__ 748 ACCGAAGGAAGCCCGGAATAA 768
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