Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05468 and RBAM_033000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence pep-align/BSNT_05468___ywtD.1.9828.seq
# -bsequence pep-align/RBAM_033000___pgdS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05468___ywtD-RBAM_033000___pgdS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05468___ywtD-RBAM_033000___pgdS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05468___ywtD
# 2: RBAM_033000___pgdS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 274/454 (60.4%)
# Similarity: 334/454 (73.6%)
# Gaps: 44/454 ( 9.7%)
# Score: 1500.0
#
#
#=======================================
BSNT_05468___ 1 MRHSLFICPAYSFCKNIKKSLNIFKKIPMLKLQKEEEIIKVNTLANWKKF 50
.|.:|:|:
RBAM_033000__ 1 ------------------------------------------MLTSWRKY 8
BSNT_05468___ 51 LLVAVIICFLVPIMTKAEIAEADTS-SELIVSEAKNLLGYQYKYGGETPK 99
:|..::||.:.|.:|:.||||||:. |.|:||:|:.|:|.:|.||||.|:
RBAM_033000__ 9 ILAGLMICLVAPAVTRTEIAEADSQVSVLMVSDAQKLVGNKYVYGGEEPE 58
BSNT_05468___ 100 EGFDPSGLIQYVFSKADIHLPRSVNDQYKIGTAVKPENLKPGDILFFKKE 149
:||||||||.|:||:.:|||||:|:||:|:|||||..:|.|||::||||.
RBAM_033000__ 59 DGFDPSGLIHYLFSRQNIHLPRTVSDQWKVGTAVKENDLLPGDLVFFKKS 108
BSNT_05468___ 150 GSNGSVPTHDALYIGDGQMVHSTQSKGVIITNYKKSSYWSGTYIGARRIA 199
.|..:.|.||.||||:|:|:||:.|:||.:|.::|||||...|:||:||.
RBAM_033000__ 109 DSTQNAPVHDGLYIGNGEMIHSSPSEGVTVTRFQKSSYWMNLYLGAKRIT 158
BSNT_05468___ 200 ADPATADVPVVQEAEKYIGVPYVFGGSTPSEGFDCSGLVQYVFQQALGIY 249
.||..||.|:||||.:|:.:|||||||||.|||||||||||||:..|.||
RBAM_033000__ 159 KDPELADDPIVQEAARYLDIPYVFGGSTPEEGFDCSGLVQYVFENKLHIY 208
BSNT_05468___ 250 LPRSAEQQWAVGEKIAPQNIKPGDVVYFSNTYKTGISHAGIYAGAGRFIQ 299
|||||||||.|||||....||||||:|||:|||.||||||||||.|||||
RBAM_033000__ 209 LPRSAEQQWLVGEKIKLSGIKPGDVIYFSDTYKKGISHAGIYAGEGRFIQ 258
BSNT_05468___ 300 ASRSEKVTISYLSEDYWKSKMTGIRRFDNLTIPKENPIVSEATLYVGEVP 349
||||.|||||||||||||...||:|||.||.|.||||:||.|..::| :.
RBAM_033000__ 259 ASRSAKVTISYLSEDYWKKHFTGVRRFSNLAISKENPVVSTAADHIG-IS 307
BSNT_05468___ 350 YKQGGVTPETGFDTAGFVQYVYQKAAGISLPRYATSQYNAGTKIKKADLK 399
|.:|||:||||||||||||||||||.||||||||..|..||..:.|.|||
RBAM_033000__ 308 YLKGGVSPETGFDTAGFVQYVYQKAKGISLPRYADKQMQAGVPVDKQDLK 357
BSNT_05468___ 400 PGDIVFFQSTSLNPSIYIGNGQVVHVTLSNGVTITNMNTSTYWKDKYAGS 449
|||:|||::.||||:||||||||:|||:|.||||||||||.||||||||.
RBAM_033000__ 358 PGDLVFFKAESLNPAIYIGNGQVIHVTVSAGVTITNMNTSAYWKDKYAGG 407
BSNT_05468___ 450 IRVQ 453
||:.
RBAM_033000__ 408 IRLP 411
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