Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05468 and RBAM_033000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence dna-align/BSNT_05468___ywtD.1.9828.seq
# -bsequence dna-align/RBAM_033000___pgdS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05468___ywtD-RBAM_033000___pgdS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05468___ywtD-RBAM_033000___pgdS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05468___ywtD
# 2: RBAM_033000___pgdS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1429
# Identity: 884/1429 (61.9%)
# Similarity: 884/1429 (61.9%)
# Gaps: 260/1429 (18.2%)
# Score: 2757.0
#
#
#=======================================
BSNT_05468___ 1 ATGAGACACTCTCTTTTTATTTGCCCAGCATATTCATTCTGTAAAAATAT 50
RBAM_033000__ 0 -------------------------------------------------- 0
BSNT_05468___ 51 CAAAAAGTCTCTTAACATATTCAAAAAAATACCGATGTTAAAACTGCAAA 100
RBAM_033000__ 0 -------------------------------------------------- 0
BSNT_05468___ 101 AAGAGGAGGAGATAATAAAAGTGAACACACTGGCAAACTGGAAGAAGTTT 150
|..||..|||.|||||.|||||..
RBAM_033000__ 1 --------------------------ATGCTCACAAGCTGGAGGAAGTAC 24
BSNT_05468___ 151 TTGCTTGTGGCGG--TTATCATTTGTTTTTTGGTTC---CAATTATGACA 195
.|.|| ||.||| ||||.||||||.||.|||..| ||.|.|.||.|
RBAM_033000__ 25 ATCCT--TGCCGGCCTTATGATTTGTCTTGTGGCACCCGCAGTAACGAGA 72
BSNT_05468___ 196 AAAGCGGAGATTGCGGAAGCTGATACATCA----TCAGAATTGAT--TGT 239
| ||||.|||||.|||||.|||.| ||| ||.|...|||| |.|
RBAM_033000__ 73 A---CGGAAATTGCTGAAGCGGATTC-TCAAGTTTCTGTCCTGATGGTTT 118
BSNT_05468___ 240 CAG-CGAAGCAAAAAACCTGCTTGGATATCAG-TATAAATAT------GG 281
||| || .||||||| |||| ||.| .|||||||| ||
RBAM_033000__ 119 CAGACG-CGCAAAAA-----CTTG----TCGGAAATAAATATGTTTACGG 158
BSNT_05468___ 282 CGGGGAAACGCCGAAAGAGGGTTTCGATCCATCAGGATTGATACAATATG 331
.||.|||..|||..|.||.|||||.|||||.||.||||||||.||.|||.
RBAM_033000__ 159 AGGCGAAGAGCCTGAGGACGGTTTTGATCCGTCCGGATTGATTCATTATC 208
BSNT_05468___ 332 TGTTCAGTAAGGCTG-ATATTCATCTGCCGAGATCTGTAAACGACCAGTA 380
|.||||| .||.|.| |.||.||||||||||||.|.||.|..||.||.|.
RBAM_033000__ 209 TTTTCAG-CAGACAGAACATCCATCTGCCGAGAACGGTCAGTGATCAATG 257
BSNT_05468___ 381 TAAAATCGGAACAGCTGT-AAAGCCGGAAA---ACCTGAAGCCGGGTGAT 426
.||..|.|||||.||.|| ||| |||| ||||....|||||.|||
RBAM_033000__ 258 GAAGGTTGGAACCGCCGTCAAA----GAAAATGACCTTTTACCGGGAGAT 303
BSNT_05468___ 427 ATTTTGTTTTTCAAGAAAGAGGGAAGCAAC------GGCTCTGTTCCGAC 470
.||.|||||||||| ||||...||..|||| .||.| |||.|
RBAM_033000__ 304 CTTGTGTTTTTCAA-AAAGTCAGATTCAACACAAAACGCAC----CCGTC 348
BSNT_05468___ 471 ACATGACGCCCTTTATATCGGAGACGGCCAAATGGTACACAGTACACAGT 520
|||||||..||||||||||||.||||..|.|||.||||||||.|.|.||
RBAM_033000__ 349 -CATGACGGTCTTTATATCGGAAACGGAGAGATGATACACAGTTCTCCGT 397
BSNT_05468___ 521 CAAAAGGGGTTATCATCAC-CAATTACAAAAAAAGCAGCTATTGGAGCGG 569
||.||||.||.|.|.|||| |..||.| ||||||||||.||||||| .|
RBAM_033000__ 398 CAGAAGGCGTAACCGTCACACGGTTTC-AAAAAAGCAGTTATTGGA--TG 444
BSNT_05468___ 570 AACTTATATC--GGAGCGAGACGAATCGCTGCCGATCCGGCAAC-GGCTG 616
||.||||||| ||.||.|..||.||..|....||||||| ||| |||||
RBAM_033000__ 445 AATTTATATCTTGGCGCAAAGCGGATTACAAAAGATCCGG-AACTGGCTG 493
BSNT_05468___ 617 ATGTTCCTGTCGTTCAGGAGG----CCGAAAAATATATCGGTGTCCCATA 662
|||..||..|||||||||||| ||| .||..|||...|.||.||
RBAM_033000__ 494 ATGACCCGATCGTTCAGGAGGCAGCCCG----TTACCTCGACATTCCGTA 539
BSNT_05468___ 663 TGTGTTTGGCGGAAGCACGCCGTCA-GAGGGCTTTGATTGCTCGGGGCTT 711
|||.||.|||||||||||||| |.| |||||.||.||.||.||.|||||.
RBAM_033000__ 540 TGTATTCGGCGGAAGCACGCC-TGAGGAGGGATTCGACTGTTCAGGGCTG 588
BSNT_05468___ 712 GTGCAATATGTGTTTCAACAGGCA--CTCGGCATTTATCTGCCGCGATCA 759
||.||||||||.|||.||.| || ||...||||||.||||||.||||.
RBAM_033000__ 589 GTCCAATATGTTTTTGAAAA--CAAGCTTCACATTTACCTGCCGAGATCT 636
BSNT_05468___ 760 GCCGAACAGCAGTGGGCAGTGGGCGAGAAGATAGCCCCTCAGAA------ 803
||.||||||||||||...||.||.|||||.| ||| ||
RBAM_033000__ 637 GCGGAACAGCAGTGGCTGGTCGGTGAGAAAA-------TCA-AACTGAGC 678
BSNT_05468___ 804 --CATAAAGCCTGGTGATGTCGTCTATTTCAGCAATACGTATAAAACGGG 851
|||||||||.||.||.||..|.|||||||||.|.||||||||||..||
RBAM_033000__ 679 GGCATAAAGCCCGGGGACGTGATTTATTTCAGCGACACGTATAAAAAAGG 728
BSNT_05468___ 852 AATTTCACATGCAGGCATTTATGCGGGCGCAGGCAGGTTCATCCAGGCGA 901
||||||.|||||.||||||||||||||.|..||.|||||||||||.||.|
RBAM_033000__ 729 AATTTCCCATGCGGGCATTTATGCGGGAGAGGGAAGGTTCATCCAAGCAA 778
BSNT_05468___ 902 GCAGGTCAGAAAAAGTAACCATTTCCTATTTGTCAGAGGATTACTGGAAA 951
||.|.||.|.||||||.||||||||.||.|||||.||.||||||||||||
RBAM_033000__ 779 GCCGCTCCGCAAAAGTCACCATTTCTTACTTGTCGGAAGATTACTGGAAA 828
BSNT_05468___ 952 TCGAAGA--TGACGGGTATTCGCCGATTTGACAACCTGACAATCCCGAAA 999
.||.| |.|||||..|.||||||||...|||..|..|.||..|.|||
RBAM_033000__ 829 --AAACATTTTACGGGGGTGCGCCGATTCAGCAATTTAGCCATTTCTAAA 876
BSNT_05468___ 1000 GAAAATCCGATTGTTTCCGAAGCGACGCTTTATGTCGGAGAAGTGCCTTA 1049
||||||||..||||.|||..||||.|...|.||.|||| |.|..||||
RBAM_033000__ 877 GAAAATCCCGTTGTGTCCACAGCGGCCGATCATATCGG---AATTTCTTA 923
BSNT_05468___ 1050 ---CAAACAGGGCGGAGTAACACCTGAGACAGGATTTGATACAGCTGGAT 1096
.||| |||||.||..||||.||.||.||.||||||||.||.||||
RBAM_033000__ 924 TCTGAAA---GGCGGCGTTTCACCGGAAACCGGCTTTGATACGGCGGGAT 970
BSNT_05468___ 1097 TTGTCCAATATGTATACCAGAAAGCAGCCGGTATTTCCCTGCCTCGATAC 1146
||||.|||||.||.||.||.|||||....||.||...||||||.||.||.
RBAM_033000__ 971 TTGTTCAATACGTCTATCAAAAAGCGAAAGGAATCAGCCTGCCGCGTTAT 1020
BSNT_05468___ 1147 GC-AACAAGCCAGTACAATG------------CCGGAACTAAGATTAAGA 1183
|| .||||| ||| ||| |||| ..|||.||.|
RBAM_033000__ 1021 GCGGACAAG-CAG----ATGCAGGCGGGCGTTCCGG----TCGATAAACA 1061
BSNT_05468___ 1184 AGGCGGACCTGAAGCCGGGAGACATTGTGTTCTTTCAATCAACAAGCTTA 1233
|||.||||||||.||.||..|.||.||||||.||.|...||||.|.
RBAM_033000__ 1062 ----GGATCTGAAGCCCGGCGATCTGGTCTTCTTTAAAGCGGAAAGCCTG 1107
BSNT_05468___ 1234 AATCCCTCCATCTATATCGGAAACGGACAAGTTGTTCATGTCACATTATC 1283
|||||..||||.||||||||.|||||||||||..||||||||||..|.||
RBAM_033000__ 1108 AATCCGGCCATTTATATCGGGAACGGACAAGTGATTCATGTCACCGTGTC 1157
BSNT_05468___ 1284 AAACGGCGTGACCATCACCAATATGAACACGAGCACATATTGGAAGGATA 1333
....|||||.|||||.||.|||||||||||.|||.|.|||||||||||.|
RBAM_033000__ 1158 CGCAGGCGTTACCATAACAAATATGAACACAAGCGCTTATTGGAAGGACA 1207
BSNT_05468___ 1334 AATACGCAGGAAGTATACGAGTGCAATAA 1362
||||.||.||..|.||.||..|.|..|||
RBAM_033000__ 1208 AATATGCGGGCGGCATCCGGCTTCCGTAA 1236
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