Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00434 and RBAM_002820
See
DNA alignment /
Visit
BSNT_00434 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence pep-align/BSNT_00434___ycbB.1.9828.seq
# -bsequence pep-align/RBAM_002820___ycbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: RBAM_002820___ycbB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity: 234/320 (73.1%)
# Similarity: 270/320 (84.4%)
# Gaps: 11/320 ( 3.4%)
# Score: 1179.0
#
#
#=======================================
BSNT_00434___ 1 MRFFIADDDRAVRSILRQIIEDEDLGEAVGEADDGSQVEGHMLQFKQIDI 50
|||||||||||:||||:|:||||||||.||||:||||:|||.|.|||:||
RBAM_002820__ 1 MRFFIADDDRAIRSILKQMIEDEDLGEVVGEAEDGSQIEGHYLHFKQVDI 50
BSNT_00434___ 51 LLIDLLMPGRDGIETIRQIQNTYSGKIIMISQVEAKEMVGEAYSLGIEYF 100
|||||||||||||||||.:|.:|:||.:||||||||||||||||||||||
RBAM_002820__ 51 LLIDLLMPGRDGIETIRHLQGSYNGKAVMISQVEAKEMVGEAYSLGIEYF 100
BSNT_00434___ 101 IHKPINRIEIVTVLQKVKERIELEHSIGAIQHSLSRLVNRTE-RKARPQQ 149
||||||:|||||||:|||||||||.|||.||||||||:.|.| :|:.|..
RBAM_002820__ 101 IHKPINKIEIVTVLRKVKERIELETSIGDIQHSLSRLIQRNEPKKSGPGG 150
BSNT_00434___ 150 KSDSGLKEAGTFLLSELGMMGEGGAHDLMAVLQYLAEHEQSEPHEKQSPS 199
..:..:||.|.|||||||::||.|||||||||.||.|.||: |:..||
RBAM_002820__ 151 MREKSIKETGKFLLSELGIVGESGAHDLMAVLHYLFEDEQA---ERNIPS 197
BSNT_00434___ 200 LKQIFTQVAVRKLGTGASQTEVNREMKASEQRIRRAIIHSLHHFASLGTT 249
|||:||.||:||||..|:|.|||||:||||||||||:||||:||||||||
RBAM_002820__ 198 LKQMFTNVAIRKLGPAAAQAEVNREIKASEQRIRRAVIHSLNHFASLGTT 247
BSNT_00434___ 250 DFSNPKFETYASKFFDFPVVSQKIKELQSKDAKPLAPARINMKKFIHVFF 299
||||||||.|||||||||.||:::||:|:|:..||:|.::||||||||||
RBAM_002820__ 248 DFSNPKFEYYASKFFDFPAVSKRMKEMQAKETVPLSPVKVNMKKFIHVFF 297
BSNT_00434___ 300 LEAKLLHETMK-----QRRI 314
||||.|.|..| .|
RBAM_002820__ 298 LEAKDLREGSKFVSGGSR-- 315
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.