Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00434 and RBAM_002820
See
Amino acid alignment /
Visit
BSNT_00434 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00434___ycbB.1.9828.seq
# -bsequence dna-align/RBAM_002820___ycbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: RBAM_002820___ycbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity: 697/978 (71.3%)
# Similarity: 697/978 (71.3%)
# Gaps: 63/978 ( 6.4%)
# Score: 2401.0
#
#
#=======================================
BSNT_00434___ 1 ATGCGTTTTTTTATTGCAGATGATGACCGTGCAGTGCGGTCAATTTTAAG 50
||||||||||||||.||.|||||||||||.||..|.||.||.|||||||.
RBAM_002820__ 1 ATGCGTTTTTTTATAGCTGATGATGACCGGGCGATCCGTTCCATTTTAAA 50
BSNT_00434___ 51 GCAGATCATTGAGGACGAAGATCTCGGGGAAGCTGTTGGTGAAGCTGACG 100
.|||||.||.||||||||.||..|.||.||||..||.|||||.||.||.|
RBAM_002820__ 51 ACAGATGATCGAGGACGAGGACTTAGGAGAAGTCGTCGGTGAGGCAGAGG 100
BSNT_00434___ 101 ACGGAAGCCAAGTGGAAGGGCA-TATGCTGCAATTTAAGCAGATTGATAT 149
||||||||||..|.|||||||| ||| ||.||.|||||.||..|.|||||
RBAM_002820__ 101 ACGGAAGCCAGATTGAAGGGCATTAT-CTCCATTTTAAACAAGTCGATAT 149
BSNT_00434___ 150 TTTATTAATCGATCTGTTAATGCCCGGAAGAGACGGCATTGAGACGATTC 199
|||||||||.||||||.|.|||||.||..|.|||||.|||||||||||.|
RBAM_002820__ 150 TTTATTAATTGATCTGCTGATGCCGGGTCGGGACGGGATTGAGACGATCC 199
BSNT_00434___ 200 GTCAGATCCA-GAATACGTACTCCGGCAAAATC-ATAATGATCTCTCAAG 247
|.||..|.|| |.|| |||||..||| ||||.| .|.|||||.||.||.|
RBAM_002820__ 200 GGCATCTTCAGGGAT-CGTACAACGG-AAAAGCGGTGATGATATCGCAGG 247
BSNT_00434___ 248 TGGAGGCGAAGGAAATGGTCGGGGAAGCGTACTCGCTCGGCATCGAATAT 297
|||||||.|||||||||||.||.|||||.||.||.||||||||||||||.
RBAM_002820__ 248 TGGAGGCAAAGGAAATGGTGGGAGAAGCTTATTCTCTCGGCATCGAATAC 297
BSNT_00434___ 298 TTTATCCATAAGCCGATTAACCGCATTGAAATTGTCACGGTTCTCCAAAA 347
||||||||.||.|||||.|||...||.||.||||||||.|||.|.|.|||
RBAM_002820__ 298 TTTATCCACAAACCGATCAACAAAATCGAGATTGTCACCGTTTTGCGAAA 347
BSNT_00434___ 348 GGTGAAGGAGCGGATCGAGCTTGAACACTCGATTGGAGCCATTCAGCATT 397
.||.||.||||||||.||.||.|||..||||||.||.|.|||.||.||.|
RBAM_002820__ 348 AGTAAAAGAGCGGATTGAACTGGAAACCTCGATCGGCGACATCCAACACT 397
BSNT_00434___ 398 CTCTAAGCCGGCTTGTCAATCGGACTGAACGG----AAAGCGCGTCCCCA 443
|..|||||||.|||.|..|.||||.|||.|.| |||||| |.||...
RBAM_002820__ 398 CGTTAAGCCGTCTTATTCAGCGGAATGAGCCGAAAAAAAGCG-GGCCGGG 446
BSNT_00434___ 444 GCAGAAGAGTGA-----CAGCGGTTTAAAAGAGGCAGGAACATTCCTGTT 488
|..||.|.|.|| || .|.|||||..||||||.|||.||.||
RBAM_002820__ 447 GGGGATGCGCGAGAAATCA-----ATCAAAGAAACAGGAAAATTTCTTTT 491
BSNT_00434___ 489 GTCCGAGCTGGGCATGATGGGAGAAGGCGGCGCACATGATCTCATGGCGG 538
.||.||..|.|||||..||||||||.||||.||.|||||.||||||||.|
RBAM_002820__ 492 ATCGGAATTAGGCATCGTGGGAGAAAGCGGGGCGCATGACCTCATGGCCG 541
BSNT_00434___ 539 TCCTGCAGTATTTAGCAGAACACGAGCAATCCGAGCCGCACGAAAAACAA 588
||||.||.||||||...||..|.||.| ||.|| ||||.|.|.
RBAM_002820__ 542 TCCTTCACTATTTATTTGAGGATGAAC------AGGCG---GAAAGAAAC 582
BSNT_00434___ 589 AGCCCTTCGCTAAAACAAATATTCACCCAAGTAGCGGTACGGAAGCTGGG 638
|.|||.||..||||.||.||.||.||..|.||.||..|.|||||||||||
RBAM_002820__ 583 ATCCCGTCTTTAAAGCAGATGTTTACAAACGTCGCCATCCGGAAGCTGGG 632
BSNT_00434___ 639 GACAGGGGCCTCACAGACGGAAGTCAATCGCGAAATGAAAGCCTCGGAGC 688
|.|.|.|||..||||..|.||.||.||..|.|||||.|||||||||||.|
RBAM_002820__ 633 GCCTGCGGCGGCACAAGCCGAGGTTAACAGGGAAATCAAAGCCTCGGAAC 682
BSNT_00434___ 689 AGCGTATCCGCAGAGCGATTATTCATTCGCTGCACCATTTTGCTTCATTG 738
||||.|||.|.||.||..|.|||||||||.|..|||||||.|||||||||
RBAM_002820__ 683 AGCGGATCAGAAGGGCCGTCATTCATTCGTTAAACCATTTCGCTTCATTG 732
BSNT_00434___ 739 GGCACAACTGATTTTTCGAATCCAAAATTTGAAACCTATGCATCGAAATT 788
|||||||||||||||||.||.||.|||||||||...||.||.||||||||
RBAM_002820__ 733 GGCACAACTGATTTTTCAAACCCCAAATTTGAATATTACGCCTCGAAATT 782
BSNT_00434___ 789 CTTTGATTTTCCGGTTGTCAGCCAGAAAATAAAAGAACTCCAATCCAAGG 838
|||||||||.||.|.|||||||.|||.|||.||||||.|.||..|.||||
RBAM_002820__ 783 CTTTGATTTCCCCGCTGTCAGCAAGAGAATGAAAGAAATGCAGGCTAAGG 832
BSNT_00434___ 839 ATGCAAAA-----CCCCTTGCACCTGCTAGAATAAATATGAAAAAATTCA 883
||| ||.|||.|.||.|.||.|.|.||||||||||||||||
RBAM_002820__ 833 -----AAACCGTGCCGCTTTCTCCGGTTAAAGTCAATATGAAAAAATTCA 877
BSNT_00434___ 884 TCCACGTGTTTTTTTTGGAAGC-AAAGCTTTTGCATGAGACGATGAAACA 932
|.|||||.||.||||||||.|| ||||.||| |..|||.|.|.||
RBAM_002820__ 878 TTCACGTCTTCTTTTTGGAGGCGAAAGATTT------ACGCGAGGGATCA 921
BSNT_00434___ 933 AA----------GAAGGATA-----TAA 945
|| |.||| .| |||
RBAM_002820__ 922 AAATTTGTCAGCGGAGG-CAGCCGGTAA 948
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.