Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05456 and BPUM_3233

See DNA alignment / Visit BSNT_05456 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence pep-align/BSNT_05456___lytD.1.24716.seq
#    -bsequence pep-align/BPUM_3233___lytD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05456___lytD-BPUM_3233___lytD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05456___lytD-BPUM_3233___lytD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: BPUM_3233___lytD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     425/883 (48.1%)
# Similarity:   575/883 (65.1%)
# Gaps:          10/883 ( 1.1%)
# Score: 2125.5
# 
#
#=======================================

BSNT_05456___      1 MKKRLIAPMLLSAASLAFFAISGSAQAAAYTDYSLYQVEPSNTFSTESQA     50
                      .|:.|..|||:||..........||||:|.|.|:|.:..|..|:|||:.
BPUM_3233___l      1 -MKKTIKIMLLAAAFGMTVHTGKEAQAASYVDQSIYTMNTSKVFTTESEV     49

BSNT_05456___     51 SQAVAKLEKDTGWDASYQASGTTTTYQISASGIHSESEAKAILSGLAKQT    100
                     .:||..|:||..|.|:||.||.|:|||::|||..|::.|.|..:.|.|:|
BPUM_3233___l     50 KKAVETLKKDKKWTATYQTSGNTSTYQLTASGYESQAAASASAAALKKET     99

BSNT_05456___    101 SITGTSSPVGSKQPYVTISSGAISGEKQANTVLAKLKQETGVAGAVKAYG    150
                     .::||.||||.:.|...:.|..::.|.||..:..:|.:.:|:....:|..
BPUM_3233___l    100 GMSGTVSPVGDRLPLQKVVSDPVNDEAQAKKLSLELTKTSGLNSTYEAIN    149

BSNT_05456___    151 AAQPYMNVMTSDIADETKVKALIQNLAKQTGIKSSYQPITHTVSVTTIRS    200
                     .::|...|::..|..|||||.:...|.||.|:.|:||......:|..:.|
BPUM_3233___l    150 QSRPSYQVISGTIDSETKVKNIQTELQKQAGVTSTYQTENKAGTVYQLIS    199

BSNT_05456___    201 GTIVGDSRAAQIKKAFQKESGLKASLKETVKGQAYYTFTTAAISGEANAK    250
                     |.|||.|:|..|.:.|||||||||.|:....|:.||..|:||...::.|:
BPUM_3233___l    200 GGIVGQSKANTILQGFQKESGLKAVLQTVTAGKPYYIVTSAAQVNQSKAQ    249

BSNT_05456___    251 TLLQQLKQSTGITGSYKSINQKTTVESYNVQSAYFKGLNTVKDAISQIKK    300
                     |||.||::...|.|..:.......|  |.::|.|||.......|.:||||
BPUM_3233___l    250 TLLTQLQREAKINGKIQKTGALKNV--YRLESGYFKDSKQASSAAAQIKK    297

BSNT_05456___    301 NTGVSGSYQQVGKSTSYTVNMKGITKQQLQKVDTFFKKKKWHYTSSSVKK    350
                     .||.:|:.|:|||:.:|.|.:..:......|...|||||||.|||   :|
BPUM_3233___l    298 QTGATGTVQRVGKTKNYIVKLNQLNDTAYGKTVAFFKKKKWRYTS---QK    344

BSNT_05456___    351 TTTSAAYQITTAKMLGEQQANKAAAFFAQKKVKATKTAAGSTAENQYQLI    400
                     .:::..||:.|..:||:.||.||||||.:|||.||....|..:::.|:|:
BPUM_3233___l    345 ISSTQPYQVVTGNLLGDDQAKKAAAFFQKKKVSATTKKTGKASDSTYRLV    394

BSNT_05456___    401 SEETSDQAKVTKGLNILKKNQLSASAKSVKKQ-IADTFKITTESLFDQTK    449
                     ..::::|||:.||...||..:.::|..:.|.| ::.|:.:.|..:::|:|
BPUM_3233___l    395 VNQSAEQAKINKGAAYLKTQKATSSITTGKGQAVSKTYSLKTTPVYEQSK    444

BSNT_05456___    450 VNQALTFFKSNHISAASQKTGQTAASSYQITTEAIISQEEIDRVLTFFKQ    499
                     |.||....|.|.: |:|.||.......|:||||..::|.::::.|::..:
BPUM_3233___l    445 VKQAQEIIKKNGV-ASSTKTLAEVVKQYRITTEPTVNQTKLNQALSYLTK    493

BSNT_05456___    500 NHIAVTTSKTGQTAYTQYKIVTTQLSSKTALNNGLTYLKSKSVTPSYTTK    549
                     ..:.....|||...|.||:|.|..:|:.|..:.||.:.|.::....|.|.
BPUM_3233___l    494 QKMKAAAQKTGTADYAQYQIKTGTISTATLRDQGLAFFKKRNEPAVYQTT    543

BSNT_05456___    550 SNTLYKISVNEQFTGNDTAAAASTKLKQLYGWTSSIVKIKNGPQIMKTNY    599
                     :...|||::.:||||..|..||...:|..||||::.|||||||.:|:|||
BPUM_3233___l    544 TKPTYKINITQQFTGLPTVNAAIAFVKSQYGWTATAVKIKNGPMVMQTNY    593

BSNT_05456___    600 NLSLRDMVQKQMTVSPQTDGAAYVSLTYINTATSTVTADVLNIRSTPE-V    648
                     ||::.:||.|||.|||||||||||...|::.|||||..|.||:||||: .
BPUM_3233___l    594 NLTVNEMVNKQMKVSPQTDGAAYVYAPYVDAATSTVNTDGLNVRSTPDSS    643

BSNT_05456___    649 SPTNVIGQFKKGDKVKIIGQINGWAKINLGWRNASSDEVVQYVDPNNFTR    698
                     |.:|::.|..||.|||.:|:...|.||:|||||||:.||.:||||.|...
BPUM_3233___l    644 SASNIVAQLNKGAKVKQLGKEGNWIKISLGWRNASAAEVQKYVDPANIAE    693

BSNT_05456___    699 DSKYYFQFLKLSQTAGLSVTEVNQKVLAGKGILTGRAKAFIDAANQYSIN    748
                     .::.||||||||:.|.|:..|||.|:|||||||.|:.:|||.||..|.||
BPUM_3233___l    694 GTQSYFQFLKLSEAANLNPAEVNSKILAGKGILAGKGQAFITAAKTYHIN    743

BSNT_05456___    749 ELYLISHALLETGNGTSALANGLTYNGKKVYNMYGIGAYDSNPNYYGAKY    798
                     |:|||||||||||||.|.||||..:||||||||||||||||||||.||||
BPUM_3233___l    744 EIYLISHALLETGNGGSILANGTMFNGKKVYNMYGIGAYDSNPNYLGAKY    793

BSNT_05456___    799 AYEQGWFTPEAAIIGGAKFIGSSYIHNTAYNQDTLYKMRWSATATHQYAT    848
                     ||||.||||||||||||||||:|||::..|.|||:||||||:.|||||||
BPUM_3233___l    794 AYEQQWFTPEAAIIGGAKFIGNSYINHATYKQDTIYKMRWSSAATHQYAT    843

BSNT_05456___    849 DIGWAYKQVNRMYSLYSLLDGYTLYFDVPEYR-    880
                     |||||||||.||||||:|||.||||:|:|.|. 
BPUM_3233___l    844 DIGWAYKQVTRMYSLYNLLDNYTLYYDIPVYNK    876


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05456 and BPUM_3233

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
