Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05456 and BPUM_3233
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_05456___lytD.1.24716.seq
# -bsequence dna-align/BPUM_3233___lytD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05456___lytD-BPUM_3233___lytD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05456___lytD-BPUM_3233___lytD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: BPUM_3233___lytD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3002
# Identity: 1717/3002 (57.2%)
# Similarity: 1717/3002 (57.2%)
# Gaps: 730/3002 (24.3%)
# Score: 4122.5
#
#
#=======================================
BSNT_05456___ 1 ATGAAAAAGAGACTAATCGCACC-----TATGCTTCTATCCGCCGCGTCC 45
.|||||||.| .||.| ||||.|.|| |||.||
BPUM_3233___l 1 GTGAAAAAAA--------CCATCAAGATTATGTTACT---CGCAGC---- 35
BSNT_05456___ 46 CTTGCCTTT--TTTGCCATATCTGGTTC-------------TGCCCAGGC 80
||||||| |.||.|| ||.| .||.||.||
BPUM_3233___l 36 --TGCCTTTGGTATGACA------GTACATACGGGCAAAGAAGCACAAGC 77
BSNT_05456___ 81 AGCCGCGTATACCGACTACTCACTATATCAAGTAGAGC-CGTCGAA--TA 127
||||.|.|||..|||..|.||..|.||| |.|..||.| |.||.|| ||
BPUM_3233___l 78 AGCCTCCTATGTCGATCAATCCATTTAT-ACGATGAACACCTCAAAAGTA 126
BSNT_05456___ 128 CGTTCAGTACAGAA--AGCCAAGCCTCACAAGCTGTCGCCAAAC-TGGAA 174
||.|..|||||| || |||....|.||||.||.| |||| |.|||
BPUM_3233___l 127 --TTTACAACAGAATCAG--AAGTGAAAAAAGCAGTGG--AAACATTGAA 170
BSNT_05456___ 175 AAAG-----ATACTGGCTGGGATGCATCC---TATCAGGCTTCAGGCACA 216
.||| |.|.||| .||.|| |||||..|.|||||.|..
BPUM_3233___l 171 GAAGGACAAAAAGTGG-------ACAGCCACTTATCAAACCTCAGGAAAC 213
BSNT_05456___ 217 ACAACGACCTACCAAATTTCCGCCTCAGGCATTCATAGCGAAT------C 260
||..|||||||.||..|..|.|||||||| ||| .|||| |
BPUM_3233___l 214 ACGTCGACCTATCAGCTCACTGCCTCAGG-----ATA-TGAATCACAAGC 257
BSNT_05456___ 261 AGAAGCGAAAGCAATACTGAGCGGACTCGC------CAAACAGAC----- 299
||.|||||..|||| |.||.| || || .|||.||||
BPUM_3233___l 258 AGCAGCGAGTGCAA----GTGCAG-CT-GCATTAAAAAAAGAGACGGGCA 301
BSNT_05456___ 300 --ATCGATTACAGGAACGTCA--AG---------TCCTGTTGGAAGCAAA 336
|.|| .|||||...||.|| || |||..|| .||||
BPUM_3233___l 302 TGAGCG-GTACAGTGTCGCCAGTAGGTGACCGGCTCCCTTT----ACAAA 346
BSNT_05456___ 337 CAGCCATATGTCACCATCTCGTCA--GGTGCCATCTCCGGAGAAAAACAG 384
..|.|.|||.|.|| |.||||| |.|| .|.|||.||.||||||
BPUM_3233___l 347 AGGTCGTATCTGAC---CCCGTCAATGATG-AAGCTCAGGCGAAAAA--- 389
BSNT_05456___ 385 GCCAACACTGTCCTAGCAAAGCTGAAA----CAGGAGACGGGAGTGGCT- 429
||...|||| |.|||.|| .|||| |||||..|...||...||
BPUM_3233___l 390 GCTCTCACT---CGAGCTAA--CGAAAACATCAGGACTCAATAGCACCTA 434
BSNT_05456___ 430 ---GGC--GCTGTAAAAGCTTACGGAGCAGCTCAGCCCT--ATATGAACG 472
||| .|..|.|||| |||.||| .||| .|.|
BPUM_3233___l 435 TGAGGCCATCAATCAAAG--------------CAGACCTTCTTAT-CAGG 469
BSNT_05456___ 473 TCATGACATCAGACATTGCTGATGAGACAAAAG----------TCAAGGC 512
||||..||..|..|||||.|..|||.||.|||| ||||..|
BPUM_3233___l 470 TCATTTCAGGAACCATTGATTCTGAAACGAAAGTTAAAAACATTCAAACC 519
BSNT_05456___ 513 G-CTTATCCAGAACCTGGCC---------------AAGCAAACGGGGATT 546
| .||| ||.||.|.|||| .|.||||| .||..
BPUM_3233___l 520 GAATTA--CAAAAGCAGGCCGGTGTCACGAGTACATACCAAAC--TGAAA 565
BSNT_05456___ 547 A-AAAGCT-------CGTATCAGCCCATCACACACACGGTGTCTGTCACA 588
| |||||| .||||||||..||..|| ||||
BPUM_3233___l 566 ACAAAGCTGGCACTGTGTATCAGCTGATTTCA-----GGTG--------- 601
BSNT_05456___ 589 ACCATTCGTTCTGGCACAATCGTGGGAGACAGCAGAGCAGCGCA---GAT 635
|| |||||.|||.|.||.| || |||.| |||
BPUM_3233___l 602 -------GT---------ATCGTTGGACAAAGTA-AG--GCGAATACGAT 632
BSNT_05456___ 636 CAAAAAAGCCTTCCAAAAGGAATCGGGGCTGAAGGCA-----TCATTAAA 680
|....|||.|||.|||||.||.||.||..|.||.||| ||
BPUM_3233___l 633 CCTGCAAGGCTTTCAAAAAGAGTCTGGTTTAAAAGCAGTGCTTC------ 676
BSNT_05456___ 681 GGAAACAGTGAAAG--GACAAGCC-TATTATA-CGTTCACAACTGCTGCC 726
||||.||||.|| |.|||||| |||||.| || |||||.|.|||||
BPUM_3233___l 677 --AAACGGTGACAGCAGGCAAGCCGTATTACATCG-TCACATCAGCTGC- 722
BSNT_05456___ 727 ATTTCAGGTGAA----GCGAATGCCAAGACTC-TATTGCAGCAGC-TGAA 770
.||.||||| .|.||.||..||||.| |.||.| .|||| |.||
BPUM_3233___l 723 ---ACAAGTGAACCAGTCAAAAGCACAGACACTTCTTAC-CCAGCTTCAA 768
BSNT_05456___ 771 ACAG-AGCACTGGCATC-ACAGGCAGCTACAAGTCCATCAATCAAAAAAC 818
|.|| ||||..| ||| ||.||.|| |.||||||.||
BPUM_3233___l 769 AGAGAAGCAAAG--ATCAACGGGAAG-------------ATTCAAAAGAC 803
BSNT_05456___ 819 AACCGTTGAGTCATACAATG---------TCCAATCAGCTTATTTCAAAG 859
|..||.| |.|.|.|||| |..||||||..||||||||||
BPUM_3233___l 804 AGGCGCT---TTAAAAAATGTGTATCGCTTGGAATCAGGCTATTTCAAAG 850
BSNT_05456___ 860 GCCTGAATACAGTAAAGGACGCCAT------CAG----CCAGATCAAGAA 899
||||.|||..| .||| ||| ||||||.|||||
BPUM_3233___l 851 --------ACAGCAAACAA--GCATCCTCCGCAGCGGCCCAGATTAAGAA 890
BSNT_05456___ 900 AAACACCGGTG-TATCCGGCAGTTATCAACAGGTTGGAAAAAGCACATCA 948
|.|.|||||.| || |.||.|.|...||.|..||.||||||| ||.|..|
BPUM_3233___l 891 ACAAACCGGCGCTA-CAGGGACTGTGCAGCGAGTGGGAAAAA-CAAAAAA 938
BSNT_05456___ 949 -TATACCGTGAA----TATGAAGGGGATAACAAAACAGCAGCTCC--AAA 991
||||.|||||| .||.||..| |||.|.|||||| |.| |||
BPUM_3233___l 939 TTATATCGTGAAGCTCAATCAACTG---AACGATACAGCA--TACGGAAA 983
BSNT_05456___ 992 AA--GTAGATACTTTCTTTAAAAAGAAAAAATGGCATTATACGTCATCCA 1039
|| ||.| |.||.||.||.||.||.|||||||..||.||.||
BPUM_3233___l 984 AACGGTGG---CCTTTTTCAAGAAAAAGAAATGGCGCTACACATC----- 1025
BSNT_05456___ 1040 GCGTCAAAAAAACAACAACGTCTGCGGCTTA-----CCAAATCA-----C 1079
.|||||.|.| |||.| || |||.|||| .
BPUM_3233___l 1026 ---GCAAAAGATC-------TCTTC----TACACAGCCATATCAAGTAGT 1061
BSNT_05456___ 1080 GACAGCCAAGATGTTAGGCGAGCAGCAAGCAAACAAAGCAGCAGCCTTCT 1129
|||.|..||..|.|||||.||..|.|||||.||.|||||||||||.||||
BPUM_3233___l 1062 GACTGGAAACCTATTAGGAGATGATCAAGCGAAAAAAGCAGCAGCTTTCT 1111
BSNT_05456___ 1130 TTGCTC----AGAAAAAAGTAAAAGCCAC------AAAAAC------AGC 1163
|| |||||||.|||..|||.|| |||||| |||
BPUM_3233___l 1112 ----TCCAAAAGAAAAAGGTATCAGCGACAACGAAAAAAACAGGTAAAGC 1157
BSNT_05456___ 1164 AGCTGGATCAACAGCA-GAAAATCAATATCAGCTCATC-TCAGAAGAAAC 1211
|.||| |||||| | ||||..||..|| ||| |..||.|
BPUM_3233___l 1158 ATCTG-----ACAGCACG--------TATCGACTTGTCGTCA-ATCAATC 1193
BSNT_05456___ 1212 ATCAGATCAAGCAAAAGTC-ACAAAGGGTTTG-AACATATTAAAGAAA-- 1257
|.|.||.|||||.|||.|| |.||||| || ..||||||.|| |||
BPUM_3233___l 1194 AGCGGAGCAAGCCAAAATCAATAAAGG---TGCCGCATATTTAA-AAACG 1239
BSNT_05456___ 1258 -----------AATCAGCTGAGTGCTTCTGCGA------AATCCGTCA-A 1289
||.|||| |.|.|..|||..| ||.|.|||| .
BPUM_3233___l 1240 CAGAAGGCGACAAGCAGC--ATTACAACTGGTAAGGGCCAAGCTGTCAGC 1287
BSNT_05456___ 1290 AAAACAAATAGCTGACACGT-TTAAAATCACAACCGA-ATCTCTGTTTGA 1337
|||||..||| || ||||.| ||| |.||.|.|.|||
BPUM_3233___l 1288 AAAACGTATA--------GTCTTAAGA-------CGACACCTGTATATGA 1322
BSNT_05456___ 1338 CCAAACGAAAGTCAATCAGGCACTCACGTTTTTCAAATCGA-ATCAT--- 1383
.||||..||||||||.||||| |||| || |||||
BPUM_3233___l 1323 GCAAAGTAAAGTCAAGCAGGC-----------TCAA---GAGATCATCAA 1358
BSNT_05456___ 1384 ---ATAT--------CAGCAG--CAA-------GCCAGAAAACCGGTCAG 1413
|.|| |||||| ||| |.||| ||..|||.|.
BPUM_3233___l 1359 AAAAAATGGCGTTGCCAGCAGTACAAAAACGTTGGCAG--AAGTGGTTAA 1406
BSNT_05456___ 1414 ACAGCTGCGAGCAGCTATCAAATCACAACTGA------AGCTATCATCAG 1457
||| .||.|.|||||||||.|| ||..| |||||
BPUM_3233___l 1407 ACA-----------ATACCGAATCACAACAGAGCCGACAGTGA--ATCAG 1443
BSNT_05456___ 1458 CCAAGAAGAGATTGACCGCGTTTTAACATTTTT---CAAAC--AAAATCA 1502
.|||.|....||..|.||| |||..|.||| .|||| |||||.|
BPUM_3233___l 1444 ACAAAACTCAATCAAGCGC----TAAGCTATTTAACGAAACAAAAAATGA 1489
BSNT_05456___ 1503 TATCGCAG----TCACAACATCAAAAACAGGCCAGACAGC---ATATACA 1545
.| |||| ||| ||||||||| |||||| .|||.|.
BPUM_3233___l 1490 AA--GCAGCTGCTCA-------AAAAACAGG---GACAGCTGATTATGCT 1527
BSNT_05456___ 1546 CAATA-CAAAATCGTGACAACA-----CAGCTCAGCAGCAAAACAGCATT 1589
||||| ||.| |.|.|||| ||.||||.||||.| ||||
BPUM_3233___l 1528 CAATATCAGA----TTAAAACAGGTACCATCTCAACAGCTA-----CATT 1568
BSNT_05456___ 1590 ----GAATAATGGGTTAACCTATCTT----AAATCGAAAAGTGTAACC-C 1630
||..|| ||.||..| ||.|| |||.||.||.| |||| .
BPUM_3233___l 1569 GCGCGACCAA-GGCTTGGC--ATTTTTCAAAAAACGGAATG---AACCAG 1612
BSNT_05456___ 1631 CTAGCTAT------ACAACGAAAAGCAA--TACGCTTTATAAAATCAGCG 1672
||..|||| |||||| |||.||| ||| |||||||.|.
BPUM_3233___l 1613 CTGTCTATCAGACAACAACG-AAACCAACCTAC-------AAAATCAACA 1654
BSNT_05456___ 1673 TAAATGAGCAGTTCACAGGCAATGATA-CAGCTG---CTGCGGCATCAAC 1718
|.|...||||.|||||||| || || ||.||| .||||| |
BPUM_3233___l 1655 TTACGCAGCAATTCACAGG--AT--TACCAACTGTAAATGCGG------C 1694
BSNT_05456___ 1719 GA-AGCT------AAAA--CAATTATACGGATGGACATCATCTATCGTGA 1759
|| .||| |||| || |||.||.||||||.|..|...|||.|
BPUM_3233___l 1695 GATTGCTTTTGTGAAAAGTCA---ATATGGCTGGACAGCTACAGCCGTAA 1741
BSNT_05456___ 1760 AGATCAAAAACGGTCCGCAAA---TCATGAAAACAAATTACAATCTCTCG 1806
|.||||||||.||.|| || |||||.||||.||.|||||.|||.|
BPUM_3233___l 1742 AAATCAAAAATGGCCC---AATGGTCATGCAAACGAACTACAACCTCAC- 1787
BSNT_05456___ 1807 CTTCGT----GATATGGTCCAAAAACAAATGACAGTAAGTCCGCAAACAG 1852
.|| ||.|||||..|.||.|||||||..|| ||||.| ||||
BPUM_3233___l 1788 ---TGTCAACGAGATGGTGAACAAGCAAATGAAGGT--GTCCCC--ACAG 1830
BSNT_05456___ 1853 AC----GGAGCGGCTTACGTATCGCTCACGTACATTA-----ATACAGCA 1893
|| ||.||.||.||.|||| |.|.||..|| |..|.||.
BPUM_3233___l 1831 ACCGATGGTGCAGCCTATGTAT-----ATGCACCATATGTCGACGCGGCG 1875
BSNT_05456___ 1894 ACATCAACCGT---TACGGCTGACGTACTAAATATCCGGTCAACGCCGGA 1940
||.|||||.|| |||| ||||...|||||.|.||.||.||.||.||
BPUM_3233___l 1876 ACGTCAACTGTGAATACG---GACGGCTTAAATGTTCGTTCGACACCTGA 1922
BSNT_05456___ 1941 ----AG-TC----AGCCCGACAAACGTGATC--GGC-CAATTTAAAAAAG 1978
|| || ||| ||| ||| ||| ||..|.||.||||
BPUM_3233___l 1923 TTCGAGCTCTGCTAGC------AAC---ATCGTGGCGCAGCTGAATAAAG 1963
BSNT_05456___ 1979 GCGATAAAGTGAAA-ATCATCGGACAGA--TAAACGGCTGGGCTAAGATC 2025
|.|..||||||||| |.|.|.|||.||| .||| ||||...||||||
BPUM_3233___l 1964 GAGCAAAAGTGAAACAGCTTGGGAAAGAAGGAAA---CTGGATCAAGATC 2010
BSNT_05456___ 2026 AATTTGGGCTGGCGAAACGCA-----AGCAGTGATG--AAGTAGTTCAAT 2068
|...|.||||||.||||.||| |||||.|.|| || |||
BPUM_3233___l 2011 AGCCTTGGCTGGAGAAATGCAAGTGCAGCAGAGGTGCAAA-------AAT 2053
BSNT_05456___ 2069 ACGTGGATCCAAATAACTTTACCAGAGACAGCA---AATACTACTTCCAA 2115
|.||.||.|||..||||.||.| |||..||| |||..|||||||||
BPUM_3233___l 2054 ATGTAGACCCAGCTAACATTGC---AGAAGGCACTCAATCTTACTTCCAA 2100
BSNT_05456___ 2116 TTTCTCAAGCTGTCACAGACAGCGGGCCTCA--GCGTTACTGAGGTCAA- 2162
|||||.||.||.||..|..|.|||...|||| .|| .|.||.|||||
BPUM_3233___l 2101 TTTCTAAAACTCTCTGAAGCTGCGAATCTCAATCCG--GCAGAAGTCAAT 2148
BSNT_05456___ 2163 TCAGAAAG-TGCTTGCGGGTAAAGGCATCCTGACAGGGAGAGCAAAGGCA 2211
|| |||| |.||.||.||.|||||.||.||..||||.|.||.|.|.||.
BPUM_3233___l 2149 TC--AAAGATTCTAGCAGGCAAAGGGATTCTAGCAGGTAAAGGACAAGCC 2196
BSNT_05456___ 2212 TTTAT--CGATGCCGCCAATCAA--TATAGCATCAACGAACTGTATTTAA 2257
||||| || ||.||.|| || |||...|||||||||.|.|||.|.|
BPUM_3233___l 2197 TTTATTACG--GCAGCGAA--AACGTATCATATCAACGAAATTTATCTCA 2242
BSNT_05456___ 2258 TCTCACACGCTCTTCTGGAAACAGGAAACGGGACATCCGCCTTAGCCAAT 2307
|.||.||.||..|.||.||||||||.|||||....|||...|||||.|||
BPUM_3233___l 2243 TTTCTCATGCGTTGCTTGAAACAGGTAACGGAGGTTCCATTTTAGCGAAT 2292
BSNT_05456___ 2308 G----GATTAACCTATAACGGAAAAAAAGTATACAACATGTATGGAATTG 2353
| ||| .|.|||.|||||.||||||||.|||||||||||.||||
BPUM_3233___l 2293 GGGACGAT----GTTTAATGGAAAGAAAGTATATAACATGTATGGCATTG 2338
BSNT_05456___ 2354 GAGCATACGACAGCAATCCGAATTACTACGGAGCCAAATATGCGTACGAG 2403
|.|||||||||||||||||.||||||..|||.||.|||||||||||.||.
BPUM_3233___l 2339 GCGCATACGACAGCAATCCAAATTACCTCGGTGCAAAATATGCGTATGAA 2388
BSNT_05456___ 2404 CAGGGCTGGTTCACACCAGAAGCGGCCATTATCGGCGGAGCTAAATTCAT 2453
|||...||||||||.|||||.||.||.|||||.|||||.||.||||||||
BPUM_3233___l 2389 CAGCAATGGTTCACGCCAGAGGCAGCGATTATTGGCGGGGCAAAATTCAT 2438
BSNT_05456___ 2454 AGGC-TCATCGTATATC---CACAACACAGCTTACAATCAGGACACACTG 2499
.||| .||.| |||||| |||..|||| |||||.||.||.||..|.
BPUM_3233___l 2439 TGGCAACAGC-TATATCAATCACGCCACA---TACAAACAAGATACGATT 2484
BSNT_05456___ 2500 TACAAAATGAGATGGTC-AGCTACAGCGACACATCAATACGCAACAGACA 2548
||.||||||.|.||||| || |.|||||||.||||||||.||||||||.|
BPUM_3233___l 2485 TATAAAATGCGCTGGTCTAG-TGCAGCGACTCATCAATATGCAACAGATA 2533
BSNT_05456___ 2549 TCGGCTGGGCGTACAAACAAGTAAACCGCATGTACAGCCTGTATTCATTG 2598
|.||||||||.||.||||||||.|..||.|||||.|||.|||||...||.
BPUM_3233___l 2534 TTGGCTGGGCATATAAACAAGTCACTCGTATGTATAGCTTGTATAACTTA 2583
BSNT_05456___ 2599 CTGGACGGCTATACACTTTACTTTGATGTTCCGGAATATCGATAA----- 2643
||.||...||||||.||.||.|..|||.|.||.| ||.||||
BPUM_3233___l 2584 CTTGATAACTATACGCTCTATTACGATATCCCAG----TCTATAACAAAT 2629
BSNT_05456___ 2643 -- 2643
BPUM_3233___l 2630 AA 2631
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