Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02448 and BPUM_1879

See DNA alignment / Visit BSNT_02448 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence pep-align/BSNT_02448___yktD.1.24716.seq
#    -bsequence pep-align/BPUM_1879.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02448___yktD-BPUM_1879.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02448___yktD-BPUM_1879.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02448___yktD
# 2: BPUM_1879
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 306
# Identity:     203/306 (66.3%)
# Similarity:   259/306 (84.6%)
# Gaps:           2/306 ( 0.7%)
# Score: 1115.0
# 
#
#=======================================

BSNT_02448___      1 MRKNESSLTSLISAFARAYHSRYDTPLIFDDFIAKDLINEKEFIDISKNM     50
                     |:|||||:|||||||||:|||::|||.||:|::||:.|:||||.:|.:||
BPUM_1879          1 MKKNESSVTSLISAFARSYHSQFDTPKIFNDYLAKEFISEKEFTEIKENM     50

BSNT_02448___     51 IQGISFFNKEIAERLQNDPEKILKWVAQIQLSPTPLARASYCEKVLHNEL    100
                     :|||.||||:||::.:.:.|:||||:.|:||||..|:||:||||:|.:|:
BPUM_1879         51 VQGIHFFNKDIAQKFEGNTEEILKWITQVQLSPITLSRAAYCEKILLHEV    100

BSNT_02448___    101 MLGAKQYVILGAGLDTFCFRHPELENSLQVFEVDHPATQQFKKNKLKDAN    150
                     .||.:|||:||||||||.||||||||||::||:||||||:|||.:|.:|.
BPUM_1879        101 ALGLRQYVVLGAGLDTFSFRHPELENSLEIFEIDHPATQEFKKQRLDEAK    150

BSNT_02448___    151 LTIPGHLHFVPMDFTKTFSYDPLLDEGFKNTKTFFSLLGVSYYVTQEENA    200
                     |.||.:|||:.|||||..||..|.::||.:.||||||||||||:|:||.:
BPUM_1879        151 LKIPSNLHFISMDFTKNLSYQNLKNKGFDHKKTFFSLLGVSYYLTKEEVS    200

BSNT_02448___    201 SLISNLFSHVPPGSSIVFDYADETLFTAKGTSNRVEHMVKMAAASGEPMK    250
                     |||.:||:.||.|||||||||||.||..||.|||||:|||||:..|||||
BPUM_1879        201 SLIDDLFTKVPSGSSIVFDYADENLFEEKGISNRVENMVKMASIGGEPMK    250

BSNT_02448___    251 SCFTYQEIEHLLESSGLLIYEHLSPDDINDLFFSNRKDNLSAFETIHYIH    300
                     |||:|.|||.:||.|.|||||||||:.:|:|:|:||:|:|||||||||||
BPUM_1879        251 SCFSYFEIEKMLEKSDLLIYEHLSPEKVNELYFNNREDDLSAFETIHYIH    300

BSNT_02448___    301 AVTSVA    306
                     |:..  
BPUM_1879        301 AIKK--    304


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.