Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00541 and BPUM_0277

See DNA alignment / Visit BSNT_00541 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:21
# Commandline: needle
#    -asequence pep-align/BSNT_00541___ldh.1.24716.seq
#    -bsequence pep-align/BPUM_0277___ldh.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00541___ldh-BPUM_0277___ldh.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00541___ldh-BPUM_0277___ldh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00541___ldh
# 2: BPUM_0277___ldh
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     257/321 (80.1%)
# Similarity:   284/321 (88.5%)
# Gaps:           6/321 ( 1.9%)
# Score: 1358.0
# 
#
#=======================================

BSNT_00541___      1 MMNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMD     50
                     |.|:.||||||||||||||||||.||||.|||||||||:|::||||||||
BPUM_0277___l      1 MTNEKVNKVALIGAGFVGSSYAFTLINQVITDELVVIDLNQDKAMGDVMD     50

BSNT_00541___     51 LNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNL    100
                     |||||||||.||.|.||.|||||||||||||||||||||||||:||||||
BPUM_0277___l     51 LNHGKAFAPHPVNTWYGDYEDCKDADIVCICAGANQKPGETRLDLVEKNL    100

BSNT_00541___    101 KIFKGIVSEVMASGFDGIFLIATNPVDILTYATWKFSGLPKERVIGSGTT    150
                     .||||||..||.||||||||:|||||||||||||||||||||||||||||
BPUM_0277___l    101 NIFKGIVDNVMKSGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTT    150

BSNT_00541___    151 LDSARFRFMLSEYFGAAPQNVHAHIIGEHGDTELPVWSHANVGGVPVSEL    200
                     ||:||||:||||||.||..||||:||||||||||.||||||:|.||::||
BPUM_0277___l    151 LDTARFRYMLSEYFDAAAHNVHAYIIGEHGDTELAVWSHANIGSVPITEL    200

BSNT_00541___    201 VEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARITKAILH    250
                     ::|||.||||:||:::::|::|||.||||||||||||||||||||:||||
BPUM_0277___l    201 MKKNDQYKQEDLDEMMENVRHAAYQIIEKKGATYYGVAMSLARITRAILH    250

BSNT_00541___    251 NENSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELNLNEKEKEQF    300
                     ||||||||||||||:||||||||||||:|||.|...:.||.||:.|||||
BPUM_0277___l    251 NENSILTVSTYLDGEYGADDVYIGVPALVNRNGATEVIELALNDTEKEQF    300

BSNT_00541___    301 LHSAGVLKNILKPHFAEQKVN    321
                     .||..|||.||.|||      
BPUM_0277___l    301 AHSVNVLKEILAPHF------    315


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.