Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00541 and BPUM_0277
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence dna-align/BSNT_00541___ldh.1.24716.seq
# -bsequence dna-align/BPUM_0277___ldh.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00541___ldh-BPUM_0277___ldh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00541___ldh-BPUM_0277___ldh.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00541___ldh
# 2: BPUM_0277___ldh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity: 713/988 (72.2%)
# Similarity: 713/988 (72.2%)
# Gaps: 62/988 ( 6.3%)
# Score: 2558.0
#
#
#=======================================
BSNT_00541___ 1 ATGATGAACAAACATGTAAATAAAGTAGCTTTAATCGGAGCGGGTTTTGT 50
||||..|||.||.|.|||||.||||||||..|.||.|||||.||||||||
BPUM_0277___l 1 ATGACAAACGAAAAAGTAAACAAAGTAGCACTTATTGGAGCAGGTTTTGT 50
BSNT_00541___ 51 TGGAAGCAGTTATGCATTTGCGTTAATTAACCAAGGGATCACAGATGAGC 100
.||.|||||||||||.|||.|.|||||.||.||||.||||||||||||..
BPUM_0277___l 51 AGGTAGCAGTTATGCCTTTACATTAATAAATCAAGTGATCACAGATGAAT 100
BSNT_00541___ 101 TTGTGGTCATTGATGTAAATAAAGAAAAAGCAATGGGCGATGTGATGGAT 150
|.||.|||||.|||.|.|||.||||.|||||||||||.||.|||||||||
BPUM_0277___l 101 TGGTTGTCATCGATTTGAATCAAGATAAAGCAATGGGTGACGTGATGGAT 150
BSNT_00541___ 151 TTAAACCACGGAAAGGCGTTTGCGCCACAACCGGTCAAAACATCTTACGG 200
|||||||||||.||.||.|||||.||.||.||.||.||.||||..||.||
BPUM_0277___l 151 TTAAACCACGGGAAAGCATTTGCTCCGCACCCAGTGAATACATGGTATGG 200
BSNT_00541___ 201 AACATATGAAGACTGCAAGGATGCTGATATTGTCTGCATTTGCGCCGGAG 250
|...|||||.||.||.||||||||.||.|||||.||.||.||.||.||||
BPUM_0277___l 201 AGATTATGAGGATTGTAAGGATGCAGACATTGTGTGTATCTGTGCTGGAG 250
BSNT_00541___ 251 CAAACCAAAAACCTGGTGAGACACGCCTTGAATTAGTAGAAAAGAACTTG 300
||||||||||.||.|||||.||..|.|||||..|.||.||.||.|||||.
BPUM_0277___l 251 CAAACCAAAAGCCAGGTGAAACGAGACTTGACCTTGTGGAGAAAAACTTA 300
BSNT_00541___ 301 AAGATTTTCAAAGGCATCGT---CAGTGAGGTCATGGCGAGCGGATTTGA 347
||.||.||.||||||||.|| || |.||.|||...||.|||||.||
BPUM_0277___l 301 AATATATTTAAAGGCATTGTAGACA---ATGTGATGAAAAGTGGATTCGA 347
BSNT_00541___ 348 CGGCATTTTCTTAATCGCGACAAATCCGGTTGATATCCTGACTTACGCAA 397
.||.|||||||||.||||.|||||.||.||||||||..|.||.||.||.|
BPUM_0277___l 348 TGGTATTTTCTTAGTCGCCACAAACCCTGTTGATATTTTAACATATGCGA 397
BSNT_00541___ 398 CATGGAAATTTAGCGGCCTGCCAAAAGAGCGGGTGATCGGAAGCGGCACA 447
|.||||||||.||.||.||.||||||||.||.||||||||.||.||.||.
BPUM_0277___l 398 CTTGGAAATTCAGTGGACTTCCAAAAGAACGAGTGATCGGCAGTGGAACT 447
BSNT_00541___ 448 ACACTAGATTCTGCGAGATTCCGTTTCATGCTGAGCGAATACTTTGGCGC 497
|||||.|||.|.||.|||||..|.|.||||||.||.||.|||||||.|||
BPUM_0277___l 448 ACACTTGATACCGCAAGATTTAGATACATGCTCAGTGAGTACTTTGACGC 497
BSNT_00541___ 498 AGCGCCTCAAAACGTACACGCGCATATTATCGGAGAGCACGGCGACACAG 547
||||.|.||.||.||.||.|||.||||.||.||||||||.|||||.||||
BPUM_0277___l 498 AGCGGCACACAATGTGCATGCGTATATCATTGGAGAGCATGGCGATACAG 547
BSNT_00541___ 548 AGCTTCCTGTTTGGAGCCACGCGAATGTCGGCGGTGTGCCGGTCAGTGAA 597
|||||.||||||||||.||.||||||.||||..||||.|||.|.|..|||
BPUM_0277___l 548 AGCTTGCTGTTTGGAGTCATGCGAATATCGGAAGTGTACCGATTACAGAA 597
BSNT_00541___ 598 CTCGTTGAGAAAAACGATGCGTACAAACAAGAGGAGCTGGACCAAATTGT 647
.|..|..|||||||.|||...|||||||||||.||..|.|| ||
BPUM_0277___l 598 TTAATGAAGAAAAATGATCAATACAAACAAGAAGATTTAGA------TG- 640
BSNT_00541___ 648 AGATGATGTGAAAA--------ACGCAGCTTACCATATCATTGAGAAAAA 689
|||||||| ||||| |.||.|||||.||.||.|||||||||||
BPUM_0277___l 641 AGATGATG-GAAAATGTTCGTCATGCCGCTTATCAAATTATTGAGAAAAA 689
BSNT_00541___ 690 AGGCGCGACTTATTATGGGGTTGCGATGAGTCTTGCTCGCATTACAAAAG 739
||||||.|||||.||.||.||.|||||||||.|.||.|||||.||||.||
BPUM_0277___l 690 AGGCGCTACTTACTACGGTGTAGCGATGAGTTTGGCCCGCATAACAAGAG 739
BSNT_00541___ 740 CCATTCTTCATAATGAAAACAGCATATTAACTGTCAGCACATATTTGGAC 789
|.|||||.||.|||||||||||.||.||.|||||||||||.||.||.||.
BPUM_0277___l 740 CGATTCTGCACAATGAAAACAGTATTTTGACTGTCAGCACTTACTTAGAT 789
BSNT_00541___ 790 GGGCAATACGGTGCAGATGACGTGTACATCGGTGTGCCGGCTGTCGTGAA 839
||..|.|||||.||||||||.||.|||||.|||||.||.||..|.|||||
BPUM_0277___l 790 GGAGAGTACGGAGCAGATGATGTCTACATTGGTGTACCTGCCCTTGTGAA 839
BSNT_00541___ 840 CCGCGGAGGGATCGCA--------GGTATCACTGAGC-TGAACT-TAAAT 879
.||....|| |||| |.|| |||| || || |.|||
BPUM_0277___l 840 TCGAAATGG---CGCAACAGAAGTGATA-----GAGCTTG--CTCTGAAT 879
BSNT_00541___ 880 GAGAAAGAAAAAGAACAGTTCCTTCACAGCGCCGGCGTCCTTAAAA-ACA 928
||.|.||||||||||||.|||...|||||.|.....|| .|||||| |.|
BPUM_0277___l 880 GATACAGAAAAAGAACAATTCGCACACAGTGTGAATGT-GTTAAAAGAGA 928
BSNT_00541___ 929 TTTTAAAACCTCATTTTGCAGAACAAAAAGTCAACTAA 966
||||....|||||||||..|
BPUM_0277___l 929 TTTTGGCTCCTCATTTTTAA------------------ 948
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