Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05617 and BL04003

See DNA alignment / Visit BSNT_05617 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence pep-align/BSNT_05617___ywmB.1.5803.seq
#    -bsequence pep-align/BL04003___ywmB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05617___ywmB-BL04003___ywmB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05617___ywmB-BL04003___ywmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05617___ywmB
# 2: BL04003___ywmB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 249
# Identity:     131/249 (52.6%)
# Similarity:   183/249 (73.5%)
# Gaps:           3/249 ( 1.2%)
# Score: 715.0
# 
#
#=======================================

BSNT_05617___      1 MNMKKKQVSHAIIISVMLSFVIAVFHTIHASELTPLAQMAEGMERQDVSI     50
                       ||.||..:|:|..|:|..::.||.::.|:..|||.|:|||:.|.||.:
BL04003___ywm      1 --MKTKQTVNALIFIVVLFLIVHVFQSLEAAGNTPLEQLAEGLSRHDVEL     48

BSNT_05617___     51 DKWTLHAKQNMSLTEKEFYQKVQRLKSEYRQYDWVIARE-DKMIKAIGTY     99
                     ::||:|.|:.::|:||:|:.|::..|.::|||:|.:.|| |..:||.|.:
BL04003___ywm     49 EEWTMHTKKQLTLSEKDFFAKLKHFKKQHRQYEWTLTREDDDTVKATGVF     98

BSNT_05617___    100 TDKKNRTSFRLQLVTTLKKHNPTSYLLYEQMSLETPDSWNDTYEQFERET    149
                     .||||..:.::.||:|.|.....|||||||......::||.||:||||:.
BL04003___ywm     99 QDKKNHINSKIHLVSTHKNQRLVSYLLYEQKGAGPRENWNATYKQFERDA    148

BSNT_05617___    150 LGIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQARSVEHVVEPNF    199
                     ..|.:||..|||||.|||:..||:|||||||:|::||.|:|||.::||||
BL04003___ywm    149 FDIMREKTAIFTCLKGHLNGMMNVVLQKKANELVHEFDAKSVEDLIEPNF    198

BSNT_05617___    200 VSISAFTDEWEEYIMTSKHKMNLQIALRSAEMGGKHTVTVGTPIVTTEY    248
                     |||||:|:||:|.|.|.||:||||::||:|.||.|.|||||||||||||
BL04003___ywm    199 VSISAYTNEWKESIKTEKHRMNLQVSLRNAGMGEKLTVTVGTPIVTTEY    247


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