Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05617 and BL04003

See Amino acid alignment / Visit BSNT_05617 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05617___ywmB.1.5803.seq
#    -bsequence dna-align/BL04003___ywmB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05617___ywmB-BL04003___ywmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05617___ywmB-BL04003___ywmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05617___ywmB
# 2: BL04003___ywmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity:     542/788 (68.8%)
# Similarity:   542/788 (68.8%)
# Gaps:          85/788 (10.8%)
# Score: 1760.5
# 
#
#=======================================

BSNT_05617___      1 ATGAACATGAAGAAAAAACAA---GTAAGCCACGC---TATTATCATTTC     44
                           |||||||.|||||||   ||.|   |.||   ||||.|.|||  
BL04003___ywm      1 ------ATGAAGACAAAACAAACGGTTA---ATGCCCTTATTTTTATT--     39

BSNT_05617___     45 CGTCATGTTAAGCTTCGTCATTG---CTGTTTTCCATACCATC-------     84
                      ||..|.|||   ||..|.||||   .|||.||.||    |||       
BL04003___ywm     40 -GTGGTTTTA---TTTTTAATTGTTCATGTCTTTCA----ATCGCTTGAA     81

BSNT_05617___     85 -CATGCGAGTGAATTAACGCCGTTAGCACAAATGGCAGAGGGGATGGAAC    133
                      || ||| |..|||  ||||||.|.|.|||..||||.||.||..||...|
BL04003___ywm     82 GCA-GCG-GGCAAT--ACGCCGCTTGAACAGCTGGCGGAAGGTTTGAGCC    127

BSNT_05617___    134 GCCAAGATGTGTCAA--TAGATAAGTGGACATTGCATGCAAAACAAAACA    181
                     ||||.||  ||||.|  |.||..|||||||..|||||.||||  ||||||
BL04003___ywm    128 GCCATGA--TGTCGAGCTTGAAGAGTGGACCATGCATACAAA--AAAACA    173

BSNT_05617___    182 TGTCACTGACC------GAAAAAGAATTTTATCAAAAAGTGCAACGTTTA    225
                         .||.|||      ||||||||.||||.|..||||.||.|||.|||.
BL04003___ywm    174 ----GCTTACCCTAAGTGAAAAAGATTTTTTTGCAAAACTGAAACATTTC    219

BSNT_05617___    226 AAATCAGAGTATCGTCAATATGATTGGGTGATTGCACGGGAAGATAAAAT    275
                     ||...|.||.||||.||||||||.|||....|..|.|||||||  |..|.
BL04003___ywm    220 AAGAAACAGCATCGACAATATGAATGGACTTTAACGCGGGAAG--ACGAC    267

BSNT_05617___    276 GATAAAGGCAATTGGC-ACA------TATACTGACAAAAAAAATCGTACT    318
                     ||||.||..||  .|| |||      |.|...|||||||||||||.||  
BL04003___ywm    268 GATACAGTTAA--AGCGACAGGTGTTTTTCAGGACAAAAAAAATCATA--    313

BSNT_05617___    319 TC--TTTTAGACTGCAGCTTGTCACAACCCTCAAAAAACACAATCCAAC-    365
                     ||  ||..|.|.|.||..|.||..|.||||.||||||.||.|    .|| 
BL04003___ywm    314 TCAATTCCAAAATACATTTGGTATCCACCCACAAAAACCAGA----GACT    359

BSNT_05617___    366 ---TTCGTATTTATTATATGAGCAAATGAGTCTAGAGA-CACCGGATAGC    411
                        ||||||||||||.|||||||||| .||.|..|.|| |||.|||.|.|
BL04003___ywm    360 TGTTTCGTATTTATTGTATGAGCAAA-AAGGCGCGGGACCACGGGAAAAC    408

BSNT_05617___    412 TGGAATGATACATATGAACAGTTTGAACGGGAGACACTTGGGATATTCCA    461
                     |||||||.|||||||.|.||||||||||||||..||.|.|..|||.|.|.
BL04003___ywm    409 TGGAATGCTACATATAAGCAGTTTGAACGGGATGCATTCGACATAATGCG    458

BSNT_05617___    462 AGAAAAAGTAGTTATTTTTACTTGTCTAAATGGTCACTTAGATGATAATA    511
                     ||||||....|..|||||||||||||||||.||.||.|||.|||.||..|
BL04003___ywm    459 AGAAAAGACCGCAATTTTTACTTGTCTAAAGGGCCATTTAAATGGTATGA    508

BSNT_05617___    512 TGAATATTGTTTTGCAAAAAAAAGCAAATCAGTTATTAAATGAATTTCAA    561
                     |||||.|||||||||||||||||||||||.||.||.||.||||||||.|.
BL04003___ywm    509 TGAATGTTGTTTTGCAAAAAAAAGCAAATGAGCTAGTACATGAATTTGAT    558

BSNT_05617___    562 GCAAGATCAGTAGAACATGTAGTTGAGCCAAATTTCGTTTCTATTTCTGC    611
                     ||||..|||||.|||.||.||.||||.|||||||||||||||||||||||
BL04003___ywm    559 GCAAAGTCAGTTGAAGATTTAATTGAACCAAATTTCGTTTCTATTTCTGC    608

BSNT_05617___    612 GTTTACA--GATGAGTGGGAAGAGTACATTATGACCTCGAAACATAAAAT    659
                       |||||  .|.||||||.||||.|.|||.|.|||....|||||....||
BL04003___ywm    609 --TTACACTAACGAGTGGAAAGAATCCATCAAGACAGAAAAACACCGTAT    656

BSNT_05617___    660 GAATTTGCAAATTGCACTTAGAAGTGCAGAAATGGGCGGAAAACATACCG    709
                     ||||||||||.|..|.|||||||.|||.|.||||||||.|||||.|||||
BL04003___ywm    657 GAATTTGCAAGTCTCGCTTAGAAATGCGGGAATGGGCGAAAAACTTACCG    706

BSNT_05617___    710 TTACGGTTGGCACACCAATCGTTACGACTGAATATTAA    747
                     |.||||||||||||||||||||.|||||||||||||||
BL04003___ywm    707 TCACGGTTGGCACACCAATCGTCACGACTGAATATTAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05617 and BL04003

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
