Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04406 and BL01360

See DNA alignment / Visit BSNT_04406 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence pep-align/BSNT_04406___msmR.1.5803.seq
#    -bsequence pep-align/BL01360___msmR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04406___msmR-BL01360___msmR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04406___msmR-BL01360___msmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: BL01360___msmR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 347
# Identity:     194/347 (55.9%)
# Similarity:   260/347 (74.9%)
# Gaps:           5/347 ( 1.4%)
# Score: 966.0
# 
#
#=======================================

BSNT_04406___      1 MVRIKDIALKAKVSSATVSRILNEDESLSVAGETRQRVINIAEELGYQTV     50
                     |..||:|||:|||||.||||:||.|:|||||.|||||:::||..|||::.
BL01360___msm      1 MATIKEIALQAKVSSTTVSRVLNHDQSLSVAPETRQRILDIAARLGYKST     50

BSNT_04406___     51 AKRRKSRGQKQRAQPLIGVLSCLSPDQERQDPYFSSIRKGIEKECFEQEI    100
                     .:||:.........|.||::.|.|.::|..||||.|||:|||.||||:..
BL01360___msm     51 RRRREVYASGSGESPRIGIVVCQSQEEELNDPYFYSIRQGIESECFERGA    100

BSNT_04406___    101 FITNSIHLGSFQEH-IFRELDGVIVIGRVHDEAVKHISGRLEHAVFINHS    149
                     |||..|.|.|.:.: ...::||:|||||::...::...|.|.:.|:|||:
BL01360___msm    101 FITKFIQLSSIRSNQPVGDVDGLIVIGRINFAGLQQCMGALNNVVYINHT    150

BSNT_04406___    150 PDPKAYDSIGIDFKSASRQAIDHLFDLGYKRLGYIGGQEKEH-TLKDGQS    198
                     .:.:..||:.:||:.|:.:|::||..|||.|:|||||:|||| .:.|.::
BL01360___msm    151 DNEELRDSVVVDFEKATGRALNHLKSLGYTRIGYIGGREKEHFRISDQET    200

BSNT_04406___    199 IRRTIEDKRLTAFLESA-APQPEHVLIGEYSMREGYRLMKKAIDQGHLPE    247
                     ....|||||||||||.| :...:|:.||||||::||.|||||:.:.::||
BL01360___msm    201 SAIEIEDKRLTAFLEMAGSDNAKHIYIGEYSMQQGYELMKKALLEKNVPE    250

BSNT_04406___    248 AFFIASDSMAIGALKALQEAGLQVPRDTAIVSFNGIEEAEFASTPLTTVK    297
                     ||||||||||||||:||:|:||:||.|.|||||||||.:|||:.||||||
BL01360___msm    251 AFFIASDSMAIGALRALRESGLKVPEDVAIVSFNGIEASEFANPPLTTVK    300

BSNT_04406___    298 VYTEEMGRTGVKLLLDRLNGRTLPHQVTLPTRLIVRQSCGCTAKEVT    344
                     |:||||||||||||||||.||.||.:||:|:.||:|:|||.:.:.  
BL01360___msm    301 VHTEEMGRTGVKLLLDRLKGRELPLKVTVPSELIIRESCGFSKRS--    345


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