Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04406 and BL01360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04406___msmR.1.5803.seq
# -bsequence dna-align/BL01360___msmR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04406___msmR-BL01360___msmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04406___msmR-BL01360___msmR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: BL01360___msmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 684/1142 (59.9%)
# Similarity: 684/1142 (59.9%)
# Gaps: 211/1142 (18.5%)
# Score: 1740.0
#
#
#=======================================
BSNT_04406___ 1 ATGGTTCG--TATTAAAGATATCGC-CTTGAAAGCTAAAGTTTCCAGCGC 47
|||| || .||||||||.||.|| ||| .|.||||||||.||.|||.|
BL01360___msm 1 ATGG--CGACGATTAAAGAGATTGCGCTT-CAGGCTAAAGTATCAAGCAC 47
BSNT_04406___ 48 AACTGTGTCCAGAATTTTAAATGAAGATGAGTCGCTTTCTGTTGCGGGCG 97
|||.||.||.||..||.|.||..|.||..||||..|.||.||.|||...|
BL01360___msm 48 AACGGTTTCAAGGGTTCTGAACCATGACCAGTCATTATCAGTAGCGCCTG 97
BSNT_04406___ 98 AAACGAGACAAAGAGTCATCAACATCGCTGAAGAGCTTGGTTATCAAACC 147
||||.||.||..|..|..|..|.||.||.|....|||.||.|||.|||
BL01360___msm 98 AAACAAGGCAGCGGATTTTGGATATAGCAGCCCGGCTCGGCTATAAAA-- 145
BSNT_04406___ 148 GTTGC-----CAAACGCC-----GAAAATCCCGCGGGCAAAAACAGCGGG 187
|| ||..|||| |.|.||.||.|.|| .||||||
BL01360___msm 146 ---GCACGCGCAGGCGCCGCGAGGTATATGCCTCAGG------AAGCGGG 186
BSNT_04406___ 188 CTCAG-CCGCTGATCGG---TGTGCTGAGCTGTCTGTCCCCTGATCAGGA 233
...|| ||||..||||| ||| |||||| ||..|.| |||||
BL01360___msm 187 GAAAGCCCGCGCATCGGCATTGT-------TGTCTG-CCAATCA-CAGGA 227
BSNT_04406___ 234 A----AG--GCAGGACCCTTATTTTTCTTCCATTCGGAAAGGGATTGAAA 277
| || |.|.||.||.||.||||.||||||..||.|.||.|||||||
BL01360___msm 228 AGAAGAGCTGAACGATCCGTACTTTTATTCCATCAGGCAGGGAATTGAAA 277
BSNT_04406___ 278 AGGAATGCTTTG-AACAGGAAATTTTCATTAC-AAATTCGATTCATC--- 322
..||.||.|||| ||.||||...||| ||||| ||||| .|||||.|
BL01360___msm 278 GTGAGTGTTTTGAAAGAGGAGCGTTT-ATTACGAAATT-TATTCAGCTGA 325
BSNT_04406___ 323 ------TCGGCTCCTTTCAGGAACATATCTTTCGG-GAATTGGATGGTGT 365
||.||||...|||| .||.|.|| ||..|.||.||..|
BL01360___msm 326 GCAGCATCCGCTCGAATCAG-------CCTGTAGGCGATGTCGACGGCTT 368
BSNT_04406___ 366 CATTGTCATCG--------------GCCGTGTTCATGATGAAGCGGTTAA 401
.||.||||||| |||| ||| ||.|||.||
BL01360___msm 369 AATCGTCATCGGAAGGATCAACTTTGCCG-GTT-----TGCAGCAGT--- 409
BSNT_04406___ 402 GCATATAAGCGGAAG-GCTTGAGCATGCCGTATTTATCAATCATTCA-CC 449
|||| ||..| |||..|..|.|.|||.|..|||||.|||.|| .|
BL01360___msm 410 GCAT------GGGCGCGCTCAACAACGTCGTGTACATCAACCATACAGAC 453
BSNT_04406___ 450 AGATCCGAA-AGCAT--ACGATTCGATTGGAATCGATTTTAAATCGGCTT 496
| || ||| ||| | .|||.|||.|||...|.||||||.|...||||
BL01360___msm 454 A-AT--GAAGAGC-TGCGCGACTCGGTTGTCGTAGATTTTGAGAAGGCT- 498
BSNT_04406___ 497 CACGCCAAGCGA-----TTGATCACCTTTTTGACT---TAGGCTACAAAC 538
||| |.|| .||| |||.|||..|.| |.|||||.|.|.
BL01360___msm 499 -ACG----GGGAGGGCGCTGA--ACCATTTGAAATCGCTCGGCTATACAA 541
BSNT_04406___ 539 GGTTAGGCTACATTGGCGGACAAGAAAAGGAGCATACGCT---GAAGGA- 584
||.|.||.||.||.||||||..||||||.||||| || |||..|
BL01360___msm 542 GGATCGGTTATATCGGCGGAAGAGAAAAAGAGCA----CTTTCGAATCAG 587
BSNT_04406___ 585 CGGCCA------AAG---CATTCGCAGAACGATTGAAGACAAACGCCTGA 625
||..|| ||| |||| ||| ||.|||||||||||.||||
BL01360___msm 588 CGATCAGGAGACAAGCGCCATT----GAA--ATCGAAGACAAACGTCTGA 631
BSNT_04406___ 626 CCGCTTTTTTGGAGTCAGCCG---------CCCCCCAGCCTGAGCATGTG 666
|.||.|||.|||||...|||| .|.|..||| .|||.|
BL01360___msm 632 CTGCGTTTCTGGAGATGGCCGGTTCGGATAACGCAAAGC----ACATTT- 676
BSNT_04406___ 667 CTGATCGGAGA-------ATACAGCATGCGTGAGGGCTATCGCCTGATGA 709
..|||||.|| ||.|||| |.||||||...|||||||
BL01360___msm 677 -ATATCGGCGAGTATTCGATGCAGC-------AAGGCTATGAACTGATGA 718
BSNT_04406___ 710 AGAAAGCAATT-----GATCAAGGCCATCTGCCGGAAGCATTCTTTATTG 754
|.|||||..|| ||..||.| |.||.|||||.||.|||||.|
BL01360___msm 719 AAAAAGCGCTTTTAGAGAAAAACG-----TTCCCGAAGCTTTTTTTATCG 763
BSNT_04406___ 755 CCAGCGATTCTATGGCGATCGGCGCATTAAAAGCGCTGCAGGAAGCCGGA 804
||||||||||.|||||.||||||||..|....|||||.|..|||.|.|||
BL01360___msm 764 CCAGCGATTCAATGGCCATCGGCGCGCTCCGGGCGCTTCGAGAATCGGGA 813
BSNT_04406___ 805 CTGCAAG--TGCCGCGGGATACTGCAATCGTCAGCTTTAACGGCATTGAG 852
|| |||| |.||| ..|||..|||||||||||||||.|||||||||||.
BL01360___msm 814 CT-CAAGGTTCCCG-AAGATGTTGCAATCGTCAGCTTCAACGGCATTGAA 861
BSNT_04406___ 853 GAAGCTGAATTTGCCAGCACGCCTTTAACGACGGTGAAGGTATACACAGA 902
|...|.||||||||.|...||||.||.||.||.||.|||||..|.|||||
BL01360___msm 862 GCGTCCGAATTTGCTAATCCGCCATTGACAACCGTAAAGGTTCATACAGA 911
BSNT_04406___ 903 GGAAATGGGCCGGACAGGCGTAAAACTGCTGCTTGACCGTCTCAATGGCC 952
.||.|||||||||||.||.||.||.||||||||.|||.|.||.||.||
BL01360___msm 912 AGAGATGGGCCGGACGGGTGTGAAGCTGCTGCTCGACAGACTGAAAGG-- 959
BSNT_04406___ 953 GTACG----CTTCCCCACCAAGTCACCCTGCCAACA----AGATTAATCG 994
|.| ||.||.|...||||.|||.|.||..|| .|||||.||
BL01360___msm 960 --AAGGGAACTGCCGCTGAAAGTGACCGTACCTTCAGAGCTGATTATTC- 1006
BSNT_04406___ 995 TAAGACAAAGCTGCGGATGTACAGCAAA-GGAGGTGACATAA 1035
|..||||||||||| |.||||||| ||||.|.|
BL01360___msm 1007 ---GGGAAAGCTGCGGA--TTCAGCAAACGGAGCTAA----- 1038
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