Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05779 and RBAM_034970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:17
# Commandline: needle
# -asequence dna-align/BSNT_05779___rocB.1.9828.seq
# -bsequence dna-align/RBAM_034970___rocB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05779___rocB-RBAM_034970___rocB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05779___rocB-RBAM_034970___rocB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05779___rocB
# 2: RBAM_034970___rocB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1729
# Identity: 1279/1729 (74.0%)
# Similarity: 1279/1729 (74.0%)
# Gaps: 74/1729 ( 4.3%)
# Score: 4559.5
#
#
#=======================================
BSNT_05779___ 1 ATGCAGTATACA-AAAATCAGTCACATGAATCCGGCTGAAAGAGTGGAGG 49
|| |||| || .|..||||..|.|||..|||||..||.|.|.|.||.|
RBAM_034970__ 1 AT---GTAT-CAGCAGCTCAGCAAAATGCTTCCGGAGGAGAAAATAGAAG 46
BSNT_05779___ 50 CGCTGACAGCATCTCTGGTCAGCC--TCAGCAGCGTGAACGGCACCGTTG 97
|..|.||...|||.||||| |.| |.|.||||.|.||||||||..|.|
RBAM_034970__ 47 CCATTACGAAATCACTGGT--GGCGTTAAACAGCATCAACGGCACATTGG 94
BSNT_05779___ 98 GAGAAGGGACAAAAGCAGATTTCATCAAAGAAGTGATCACGAGCTATCCT 147
|||||||.|.||||||.||.|..||||||||..||||||.|||||.|||.
RBAM_034970__ 95 GAGAAGGAAAAAAAGCCGACTATATCAAAGATATGATCAAGAGCTTTCCC 144
BSNT_05779___ 148 TATTTTCAGGAAAACCCCAGT--CATGTGTGGGAACAGGCCATTCCCAAT 195
||.||||||||.||.|| || |||||||||||.|||||.|||||..|.
RBAM_034970__ 145 TACTTTCAGGAGAATCC--GTCACATGTGTGGGAGCAGGCGATTCCTGAG 192
BSNT_05779___ 196 GACCCATACAATCGCAAAAATATTTTTGCGTTTATTAAAGGACATGGAGA 245
|||||.|||...||||||||||||||.||.||||||.|.|||.|.||.||
RBAM_034970__ 193 GACCCTTACGGCCGCAAAAATATTTTCGCATTTATTGAGGGAAACGGCGA 242
BSNT_05779___ 246 AAGCCGTAATACAGTCATTTACCATGCCCATCTGGATACAGTTGGAATCG 295
|||||..|||||.||||||||.||.||.|||||.|||||.||.||.||||
RBAM_034970__ 243 AAGCCTGAATACGGTCATTTATCACGCTCATCTTGATACGGTCGGCATCG 292
BSNT_05779___ 296 AAGATTTCGGCCCTTTAAAGGATATCGCTTTTGATTGTGAGAAATTGGCC 345
|.|||||||||||||||||.||||||||||||||||..||.....|.||.
RBAM_034970__ 293 AGGATTTCGGCCCTTTAAAAGATATCGCTTTTGATTCCGACCGTCTCGCG 342
BSNT_05779___ 346 GAGTATTTC----AGCCGCTATGAGTTCGATCAGGATGTTCAGCGGGATG 391
||.|||||| | ||||||.||.||||.||||||.||||||||.|
RBAM_034970__ 343 GAATATTTCTCAAA----CTATGAATTTGATCGGGATGTGCAGCGGGACG 388
BSNT_05779___ 392 CCAAATCAGGCGATTGGATGTTCGGAAGAGGATCTGTTGATATGCAAAGC 441
||...||||||||.||||||||||||||.||.||.|||||||||||.|||
RBAM_034970__ 389 CCCGCTCAGGCGAGTGGATGTTCGGAAGGGGTTCGGTTGATATGCAGAGC 438
BSNT_05779___ 442 GGCATCGCCGTGCATTTAGCCAATCTCCTGCATTTTTCGGAGAAC--CTT 489
||.||.|||||.|||.|.||||||||.||.||.||||| .|||| |..
RBAM_034970__ 439 GGTATTGCCGTTCATCTCGCCAATCTGCTTCACTTTTC--TGAACGGCGC 486
BSNT_05779___ 490 GAGACGTTGCCGGGAAATGTATTGTTTATGGCCAATCCCGATGAGGAGAG 539
||...|.|||||||..||.|..||||.|||||.|||||.|||||.||.||
RBAM_034970__ 487 GATCAGCTGCCGGGCCATATTCTGTTCATGGCAAATCCGGATGAAGAAAG 536
BSNT_05779___ 540 CCAGCATTCGGGCATTCTCGCCAGCATTTCAGAGCTGAACCGGTTAAAAA 589
|||||||||.||||||.|..||||||||||.||..|.||.|||.|.|||.
RBAM_034970__ 537 CCAGCATTCCGGCATTTTAACCAGCATTTCTGAATTAAAACGGCTGAAAC 586
BSNT_05779___ 590 AAGAAAAACAGCTTCACTATTTGGCTGCTATTAATACAGATTTTATTACC 639
|||||||.|||||||..|||||.||.||.|||||||..||||||||.||.
RBAM_034970__ 587 AAGAAAAGCAGCTTCGTTATTTAGCAGCGATTAATAACGATTTTATCACG 636
BSNT_05779___ 640 CCGCTTTACGATGGTGATCA-GACAAGATATATCTATACCGGAGCCGCGG 688
|||||.||.||.||||| || ||||||.||.|||||.||.||.||.||.|
RBAM_034970__ 637 CCGCTGTATGAGGGTGA-CACGACAAGGTACATCTACACGGGCGCGGCAG 685
BSNT_05779___ 689 GAAAACTGCTGCCATGCTTTTACATTTACGGGCGTGAAGTCCATGTTGGC 738
|.||.||..||||.||||||...|||||||||||.||.||.|||||.||.
RBAM_034970__ 686 GGAAGCTTTTGCCTTGCTTTGCGATTTACGGGCGGGAGGTGCATGTCGGT 735
BSNT_05779___ 739 GATACACTGGCAGGGATTGACCCAAATTTCATTTCATCTGAAATCACAAG 788
|||||.|||.|.||.||.||.||.|||||.||..||||.||||||||.||
RBAM_034970__ 736 GATACGCTGTCCGGCATCGATCCGAATTTGATCGCATCAGAAATCACCAG 785
BSNT_05779___ 789 CCGTCTCCACAATAACATCCATCTGGCAGAAAAGGTTGAAGGGGAGTTGG 838
..|..|.|||||.||.||.|||.||||.|||||..|||||||||||.|.|
RBAM_034970__ 786 AAGAATTCACAACAATATTCATATGGCGGAAAACATTGAAGGGGAGCTTG 835
BSNT_05779___ 839 TTCTGCCACCATCCTGTTTGTATCAGCGTGATAACAAGGAATCCTATAAT 888
|.||.||.||..||||..||||.||||||||.||.||||||.|.|||||.
RBAM_034970__ 836 TGCTTCCGCCGACCTGCCTGTACCAGCGTGACAATAAGGAAGCGTATAAC 885
BSNT_05779___ 889 GTGCAAACGGCTGTCAGCACCAGCT---TGTACTTCAATTGTTTTATTTA 935
|||||.||.||.||||| ||||| |.||.||.||||.|||||||||
RBAM_034970__ 886 GTGCAGACCGCCGTCAG---CAGCTATGTCTATTTTAATTATTTTATTTA 932
BSNT_05779___ 936 TGAAAGAACAGCAAAAGAAATGATGGATTTGCTTATTGAAGTCACTGAGG 985
.||.|.|||.||.||||.|.|.||||||..|||.|.||..||..||||.|
RBAM_034970__ 933 CGAGAAAACCGCCAAAGTAGTCATGGATCAGCTGACTGCCGTGGCTGACG 982
BSNT_05779___ 986 AAGCATGCCAAGAGACAGAACAAAAATTATCAGATTATTATGAAGAATA- 1034
||||.|||..|||||||||.|||||||||||.||||||||.||.|||||
RBAM_034970__ 983 AAGCCTGCAGAGAGACAGAGCAAAAATTATCTGATTATTACGACGAATAC 1032
BSNT_05779___ 1035 --TGCAAAAAGAGCCAACCTGCCAAAGAAACATTTATCATGGGACATTCA 1082
|| |.|||.|.|.||||||.||.|||.|..|.||||||.||.||||
RBAM_034970__ 1033 TGTG---AGAGAACGAGCCTGCCGAAAAAAGAGATGTCATGGAACGTTCA 1079
BSNT_05779___ 1083 AGTGTATAGCCTGGAGCAATATTTAGAAAA-GCTGAGAAACCGGGGGATA 1131
||||||.||.|||||..|.||..| ||||| |||.||||.|||.||||||
RBAM_034970__ 1080 AGTGTACAGTCTGGAAGATTACCT-GAAAAGGCTTAGAAGCCGCGGGATA 1128
BSNT_05779___ 1132 GATCCCGAGCAGTGTATCGAGCAGACATTCAAAGCCAACGAGCACCTTGA 1181
||.||.|..|||||||||||||||.||||.|||.|..|.||.||.|||||
RBAM_034970__ 1129 GACCCTGCACAGTGTATCGAGCAGGCATTTAAAACATATGAACATCTTGA 1178
BSNT_05779___ 1182 ACTTCGCATGAGATGCTTTCAGGCAATCGAAGAGCTTCAAAAGCTTGACC 1231
|||.||.||||||||||||.|.||..||||.||.||.|||||.||.||.|
RBAM_034970__ 1179 ACTGCGGATGAGATGCTTTAAAGCCGTCGAGGAACTGCAAAAACTCGATC 1228
BSNT_05779___ 1232 CCGATCAAGGCGCAAAAGTCATTCTATTTTACGCACCTCCTTACCTGCCA 1281
|.||.||.||.||.||.||||||.|.||.||.||.||.||||||||.||.
RBAM_034970__ 1229 CTGAGCAGGGAGCCAAGGTCATTATTTTCTATGCGCCGCCTTACCTTCCG 1278
BSNT_05779___ 1282 CATAACTATTTGAAAGAAGATAGCGCAAGAGATCAGCTTTTGCAGCATGT 1331
||.||.|||.||||||||||.|||.||.|.||.|.|||||||||||||||
RBAM_034970__ 1279 CACAATTATCTGAAAGAAGAGAGCTCACGGGACCGGCTTTTGCAGCATGT 1328
BSNT_05779___ 1332 GATTAAAGAAGCGGCTGACAAAACCGCTGAATCGACAGGCGAAACATTTG 1381
.|||.|||||||||..||.|||||.||.|.|||.||.||.||||||||.|
RBAM_034970__ 1329 CATTCAAGAAGCGGTCGATAAAACAGCGGCATCAACCGGAGAAACATTCG 1378
BSNT_05779___ 1382 TCTTCAAAAAGTTTTTCCCCTACTTGGCAGACGGCAGTTTTTTATCACTG 1431
||||.||||||||||||||.||.||.||.|||||.||.||||||||.|||
RBAM_034970__ 1379 TCTTTAAAAAGTTTTTCCCTTATTTAGCGGACGGAAGCTTTTTATCGCTG 1428
BSNT_05779___ 1432 CACGAAACCGATGGCGAAATTGA-TTCT-----TTTATCAGGAACTTTCC 1475
||.|||||.|| ||| .|| .||| ||||.|...||.|||||
RBAM_034970__ 1429 CATGAAACAGA---CGA---GGAGGTCTCCGCCTTTACCGATAATTTTCC 1472
BSNT_05779___ 1476 TGGGTGGAATATGATTGGGACCATTCCGTTCAAAGATAT-ACGCAAGCTG 1524
.||.|||.||.|.||.|||||.|||||.||.|||||.|| |.|.|| .||
RBAM_034970__ 1473 GGGCTGGGATGTCATCGGGACGATTCCTTTTAAAGAAATCAGGGAA-TTG 1521
BSNT_05779___ 1525 AATATTCCATCCATTAATATGGGTGTGTACGGAAAAGACGGCCATAAATG 1574
||||||||.||..|.|||||.||.||.||||||||.||||||||||||||
RBAM_034970__ 1522 AATATTCCGTCGGTCAATATAGGGGTATACGGAAAGGACGGCCATAAATG 1571
BSNT_05779___ 1575 GACAGAACGAGTCTATAAACCGTACACATTTCATGTATTGCCTCTCCTCA 1624
|||.|||||.||.||.||.|||||||||||.|||||..||||....||||
RBAM_034970__ 1572 GACGGAACGCGTGTACAAGCCGTACACATTCCATGTGCTGCCGGAGCTCA 1621
BSNT_05779___ 1625 TACAGCAAACCACCGTTCACCTTTTGCAAAGCTACCGGAT--GACCATCA 1672
|.|||||.||.||..|.|||||||||||.||||||| ||| || ||| |
RBAM_034970__ 1622 TTCAGCAGACGACAATGCACCTTTTGCACAGCTACC-GATTAGA-CAT-A 1668
BSNT_05779___ 1673 CGGCAAAAGAACCAAAGGGGGAAGGATGA 1701
| |||.|| |.||.|||
RBAM_034970__ 1669 C-GCACAA-------------ATGGCTGA 1683
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