Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05654 and RBAM_034190

See Amino acid alignment / Visit BSNT_05654 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:09
# Commandline: needle
#    -asequence dna-align/BSNT_05654___racA.1.9828.seq
#    -bsequence dna-align/RBAM_034190___racA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05654___racA-RBAM_034190___racA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05654___racA-RBAM_034190___racA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05654___racA
# 2: RBAM_034190___racA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity:     410/587 (69.8%)
# Similarity:   410/587 (69.8%)
# Gaps:          55/587 ( 9.4%)
# Score: 1344.5
# 
#
#=======================================

BSNT_05654___      1 ATGAATACAAATATGGTAGCAAGTGAACTCGGCGTCTCCGCAAAAACGGT     50
                     |||||||||||.||||..||.|..||.|||||||||||||||||||||||
RBAM_034190__      1 ATGAATACAAACATGGCCGCGAAAGAGCTCGGCGTCTCCGCAAAAACGGT     50

BSNT_05654___     51 GCAGCGGTGGGTGAAGCAGCTGAATCTTCCGGCCGAACGCAATGAGCTCG    100
                     |||..|||||||.||||||||||||||||||||.|||||.||||||||||
RBAM_034190__     51 GCAAAGGTGGGTCAAGCAGCTGAATCTTCCGGCTGAACGGAATGAGCTCG    100

BSNT_05654___    101 GACACTATTCGTTCACGGCAGAAGA-CGTGAAGGTTCTAAAATCCGTTCA    149
                     ||||.|||||.||.||..|.||.|| |.|| |.||.||.|||| ||.|||
RBAM_034190__    101 GACATTATTCCTTTACACCTGAGGATCTTG-ATGTGCTGAAAT-CGGTCA    148

BSNT_05654___    150 AA-AACAAATCTCTGAAGGCACGGCGATTCAGGATATTCATCTGCC---G    195
                     || ..|||||.|||||||||||.||..|||.|||..||||..||||   |
RBAM_034190__    149 AACGGCAAATTTCTGAAGGCACTGCCCTTCTGGACGTTCAAGTGCCCCGG    198

BSNT_05654___    196 AAAAGCGCTAAAAAGCGCACAGGCTTCCTT-------GTCCAAAAAACAA    238
                       .||| |.|||||.||.|||||||||.||       ||||.||||.|||
RBAM_034190__    199 --CAGC-CGAAAAAACGGACAGGCTTCATTTTGCAGCGTCCGAAAATCAA    245

BSNT_05654___    239 GTAGCGACACAGAACGAAGAATCG-AGCAGCTTGAACAAAAGCTGGACAC    287
                      |.|||.|.|.||||.||||.|.| || ||||.||.|..||.||||||| 
RBAM_034190__    246 -TGGCGGCGCTGAACAAAGATTGGCAG-AGCTGGAGCGCAAACTGGACA-    292

BSNT_05654___    288 CCTTTTACAGCAAAG----GCAGGACGAAAGCGAATTGATGGCAAGGATG    333
                        ||..||..||||    .||.|..||.|||.|..||.|..|||||||.
RBAM_034190__    293 ---TTCTCACGAAAGAGAAACAAGGTGAGAGCCATCTGCTTTCAAGGATA    339

BSNT_05654___    334 TCGGAACTGGAACGCCAGCTGAAACAAAAAGCCGATGAAGGTGTATCTTA    383
                     ..|||.||.||||||||||||||||||||.||.||||||||.||.|||||
RBAM_034190__    340 GAGGAGCTTGAACGCCAGCTGAAACAAAAGGCGGATGAAGGGGTGTCTTA    389

BSNT_05654___    384 CCAGCTGCTTCAGCACCGCAGAGAAATCGATGA----TATTC----TTGC    425
                     .|||||.|||||||||.|..|.|||||.||.||    .||.|    ||||
RBAM_034190__    390 TCAGCTTCTTCAGCACAGGCGGGAAATTGACGACCTCAATACCGAATTGC    439

BSNT_05654___    426 AGATCTGCAATCAATGACCTCACAAATGAAAGAA-TTCACCGCTCAG-CC    473
                     |||        ||.||.||||.|..||..|.||| ||    ||.||| |.
RBAM_034190__    440 AGA--------CATTGGCCTCCCGCATCCAGGAACTT----GCCCAGACA    477

BSNT_05654___    474 GATCCCC-----GAGACTGCTGCTGCTTCTGAAAAAACCAAAACGAGAAA    518
                     |.|||||     ||.||.||.|||.||||.|||.|.|..|||.|.|||||
RBAM_034190__    478 GCTCCCCTCTCAGAAACAGCCGCTTCTTCAGAACATAAGAAACCCAGAAA    527

BSNT_05654___    519 AAAACCGCTGCTGTCACTGTTCAAATTTCAAACCTAA    555
                     ||||.||....|.||.|..||.|||||||||..||||
RBAM_034190__    528 AAAAACGAGATTTTCGCCTTTTAAATTTCAATTCTAA    564


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