Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05428 and RBAM_032780
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05428___lytB.1.9828.seq
# -bsequence dna-align/RBAM_032780___lytB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05428___lytB-RBAM_032780___lytB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05428___lytB-RBAM_032780___lytB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05428___lytB
# 2: RBAM_032780___lytB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2367
# Identity: 1393/2367 (58.9%)
# Similarity: 1393/2367 (58.9%)
# Gaps: 468/2367 (19.8%)
# Score: 3453.0
#
#
#=======================================
BSNT_05428___ 1 TTG-----AAAAAGATGAAGCT-TCTGGTTCTGTCGTCAGTAACTGCTGC 44
||| ||.||.||| .||| ||||.||.|.| ||.| || |.|
RBAM_032780__ 1 TTGAAGAAAACAATATG-GGCTGTCTGTTTTTCT-GTGA-TA-----TTC 42
BSNT_05428___ 45 AGCTCTGATG-TTTA----CGCAA------TCTGC--CCAGGCTGCCGAC 81
||| ||| | |||| ||.|| |.||| |||| |.|.||
RBAM_032780__ 43 AGC-CTG--GCTTTATTACCGGAAAGCACTTTTGCGTCCAG--TTCTGA- 86
BSNT_05428___ 82 AAAACAATTTCGGTAAAGTTAAGTAATTATTTGGGCAATAAATCAAGTGT 131
.||.||.|||||..|.|..||||||.|.||.||||||||.|.|.|
RBAM_032780__ 87 -----TATCTCAGTAAAACTGACGAATTATATTGGTAATAAATCGACTCT 131
BSNT_05428___ 132 TGATATCGA--CATTACCGG--CTTATACGAAATTCCGGG---------C 168
..||||||| ||| |.|| |||||| ||.|..|||| |
RBAM_032780__ 132 GAATATCGAACCAT--CAGGAACTTATA--AACTGACGGGAAGCGATGTC 177
BSNT_05428___ 169 TCAGGAATCTCCG-CGACAGAGCGGTACGGCGGGGCGACCCGCTTTGATG 217
|| ||||| .|.|||| |..||.||.|||.||...|.||||.
RBAM_032780__ 178 TC------CTCCGTTGCCAGA----TTGGGAGGCGCGTCCAAATATGATA 217
BSNT_05428___ 218 TGGCAAACAATGTCG---CATCTGCCGGA-----TGGACGAACCCGAGCA 259
.|||.||| |.|| ||||| | ||||..||||||..||
RBAM_032780__ 218 CGGCTAAC---GCCGCGACATCT-----AAGTATTGGAAAAACCCGTCCA 259
BSNT_05428___ 260 CAGTCGTGATTGTCAA-CCGAGACGC---TTTTGCGGACGCGCTCTCTGC 305
..||.||..|.||.|| .|| ||.|| ||||||.|||.||||.||.|.
RBAM_032780__ 260 ACGTAGTCGTCGTTAATACG-GATGCATATTTTGCAGACACGCTTTCCGT 308
BSNT_05428___ 306 AACTCCGCTTGCAAAGAAGTAC--GATGCGCCGATTCTTTTAACAGATGC 353
.|.|||..|.||.||.|| || .|.|||||..||||..|.||.||.||
RBAM_032780__ 309 CATTCCTTTAGCGAATAA--ACTGAAAGCGCCTGTTCTGCTGACTGAAGC 356
BSNT_05428___ 354 GGGAACGCTGA-CGGCGAAAACCGAAACTCAAATTGCCAAGA---TGAAG 399
|..||.||||| |.|| |..||.|||.|.||||| ||||| |.|..
RBAM_032780__ 357 GAAAAAGCTGAGCAGC-AGCACAGAAGCGCAAAT---CAAGAAATTCAGT 402
BSNT_05428___ 400 CCAGATAACATCTTAATTATCGGTGGAAC-AACGAGCGTTTCCAAAAATG 448
||.|||||.||.|||||.|||||.||.|| ||| ||..|||| |
RBAM_032780__ 403 CCGGATAATATTTTAATCATCGGCGGGACGAAC-AGTATTTC-------G 444
BSNT_05428___ 449 T-------TGAAAACACGCTGAAAAAGTATGGGGCAATTGTCCGT----- 486
| .|||||.||..||||.||.||.|| ||||
RBAM_032780__ 445 TCAGCCGCGGAAAAGACATTGAAGAAATACGG---------CCGTACGAA 485
BSNT_05428___ 487 ----ATCGGCGGCGCCAATCGATATGATGTGTCTAAAAATATTGCGAGCC 532
|||.||||....||..||||||||.||||.|||||||||||| |||
RBAM_032780__ 486 ACGGATCAGCGGAAAAAACAGATATGATCTGTCCAAAAATATTGCG-GCC 534
BSNT_05428___ 533 G-GATGGGGTCCTACAGCCAGGCGATTGTTGCCACCGGTTTGGTCTTCTC 581
| .|||||...|||...|||||||.|.||.|..||.||....||.|...|
RBAM_032780__ 535 GAAATGGGCAGCTATGACCAGGCGGTCGTAGTAACGGGGGATGTATATAC 584
BSNT_05428___ 582 CGACGCTCTGTCGATCGCGCCTTATGC--GGCAATGAACGGTTATCCGAT 629
.||.||.|||.|.|||||||||||||| .|||| |||||.||||||||
RBAM_032780__ 585 GGATGCGCTGGCAATCGCGCCTTATGCTGCGCAA--AACGGCTATCCGAT 632
BSNT_05428___ 630 ACTGCTCTCAGGGAATAA----TACGATCCGAAGCGATTACAATATTCCG 675
.||.||..| |||.|| |.|..|||| ||| ||||||.|.||.
RBAM_032780__ 633 TCTCCTGAC---GAAAAAAGACTCCCTTCCG-AGC---TACAATCTGCCT 675
BSNT_05428___ 676 AGCAAAGTTACAATCGTCGGCGGTCCGTTGAGTGTCAGCACAAG-TGTTG 724
|..|||||.|..|||.|.||.||..|.|..||.||||||| ||| |||.|
RBAM_032780__ 676 AAAAAAGTGATCATCATGGGAGGCACTTCAAGCGTCAGCA-AAGATGTGG 724
BSNT_05428___ 725 A-AAACACATTAAAGAAAAAAGCGGCTGTTACC---CGCATCGGCGGTGC 770
| ||.||.|||||| ||.||.||..|.||.||| .|.||...|||..|
RBAM_032780__ 725 AGAATCAAATTAAA-AAGAAGGCCTCGGTCACCAAAAGAATTACCGGATC 773
BSNT_05428___ 771 GAACAGATATGAAGTGTCTGCGAATATTGTTAACGCGCTTAACATGAACG 820
.|||||||||.||.|.||.||.||....||.|...||||...||||.|.|
RBAM_032780__ 774 AAACAGATATCAAATATCAGCAAACGCAGTCACTTCGCTCGGCATGGATG 823
BSNT_05428___ 821 C-ATCAAA--GGTTTTCATGTCT---AACGGAATGACT---TTTGCAGAT 861
| |.|||| || ||.|| ||||| |||| ||.||.||
RBAM_032780__ 824 CAAGCAAAACGG------TGGCTGCCAACGG---GACTAAATTAGCGGA- 863
BSNT_05428___ 862 GCA--CTGGCCGGTTCCGTCCTTGCAGCCAAACAAAAGCATCCTTTGCTA 909
|| .|.|.|||.||.....||||.||| .||| |||...|||..
RBAM_032780__ 864 -CATCGTTGTCGGATCAAATATTGCCGCC--GCAA----ATCACATGCCG 906
BSNT_05428___ 910 CTTGTCCA-ATC-------GGGCAGTTTGCCGCCTCCTGTCGCAGATGTA 951
|||||..| ||| |.|.| .|.|| |||.||.| |
RBAM_032780__ 907 CTTGTATACATCAAAAAAAGCGAA--------ACACC---CGCCGACG-A 944
BSNT_05428___ 952 GTC--GCC------AAA--AAAGGAACACAGTCTTTTGCTTTGCTTGGAG 991
|.| ||| ||| |||||.||..|.||||.|.|.||..| ||
RBAM_032780__ 945 GGCCAGCCTTTTTAAAACGAAAGGCACCTATTCTTATACATTAAT---AG 991
BSNT_05428___ 992 GGACCGC---CTCGATCACGGATTC-GTTGAAAAACAGCCTGGCAGATAT 1037
|.|.||| .||.||..|.||||| |||.| ||| |
RBAM_032780__ 992 GTAGCGCGAATTCAATTGCCGATTCAGTTAA----------GGC-----T 1026
BSNT_05428___ 1038 GATTAC-----------------CGGGAACGGA------TACTCTGTT-A 1063
|.|||| ||..|||||| |||..|.|| |
RBAM_032780__ 1027 GCTTACGCAAAAGAGTTTTATCTCGTAAACGGAAAGACGTACCGTATTGA 1076
BSNT_05428___ 1064 ATCTATCGGGCGGAAA-----GCTTGTGC-----TCAACAAAAATAATAA 1103
|.| .||.|||||.|| ||.| ||| |.|||
RBAM_032780__ 1077 AAC-GTCCGGCGGCAAATTAGGCGT-TGCAGGCATTAAC----------- 1113
BSNT_05428___ 1104 AGCTGTCAAAACGTTTGAAACTTCATTTACGGCATCACCTAAAAAATATT 1153
|||.| || ||||.||.||.|.|||....|||.|||||||||
RBAM_032780__ 1114 AGCGG----AA------AAACGTCTTTCAAGGCGGTTCCTGAAAAATATT 1153
BSNT_05428___ 1154 CGACTTCAAATTCCATCAGCATCAACGGAAGGCCTTATTTAGGCAATATG 1203
|.||..||||..|.||||||||..||||.|.|||.|||.|.||.||||||
RBAM_032780__ 1154 CAACAGCAAACACAATCAGCATTGACGGGAAGCCATATCTGGGGAATATG 1203
BSNT_05428___ 1204 AAGTTT-ACGATTGAATCAAGCAAATATATTCGACCGATAAACGAAAACA 1252
||||| ||....|||||..||||||||.|..||||..|.||.|||||||
RBAM_032780__ 1204 -AGTTTCACTGCGGAATCCGGCAAATATGTAAGACCTGTTAATGAAAACA 1252
BSNT_05428___ 1253 TTCCGTTTGAAGATTATCTAAAAGGTGTTGTGCCGCACGAAATGCCGGCA 1302
||||.|||||.||||||||.||||||||..|||||.|.||||||||||.|
RBAM_032780__ 1253 TTCCTTTTGAGGATTATCTGAAAGGTGTCCTGCCGAATGAAATGCCGGGA 1302
BSNT_05428___ 1303 AGTTGGCAGACTGAAGCTTTAAAAGCCCAAGCGGTGGCAGCGAGAACATA 1352
||.||||.|||.|||||..|.||||||||.||.||.||.||..|.||.||
RBAM_032780__ 1303 AGCTGGCCGACAGAAGCGCTGAAAGCCCAGGCTGTTGCCGCCCGCACCTA 1352
BSNT_05428___ 1353 TTCGGTCGGTTCCGCA-----GGAAAAGTAGTGGCTGATACGCAATCG-- 1395
.||..||| ||| |||.||..|||.||.||||| |.||
RBAM_032780__ 1353 CTCTATCG-----GCAAGATGGGACAAACAGTCGCGGATAC---AACGGC 1394
BSNT_05428___ 1396 -TTTCAGGTTTACGGCGGATATGACTGGAATTCGAA-GACATC-CAG-CG 1441
||||||||||||||.|||||...||||.||.|.|| |.||.| ||| ||
RBAM_032780__ 1395 CTTTCAGGTTTACGGGGGATACAGCTGGTATCCAAACGCCACCGCAGCCG 1444
BSNT_05428___ 1442 TTGTAAATTCCACAAAAGGACAAGTTTTAAAATATAACGGCAATTTGATT 1491
|| ||....||||||||..||||..|.|..|||..|||||..|||||.
RBAM_032780__ 1445 TT---AACGGAACAAAAGGGAAAGTGCTCACTTATTCCGGCAGATTGATA 1491
BSNT_05428___ 1492 TCGGCCGTTTACTCATCAAGCAACGGGGGATATACGGAAGCAAGCGCAGA 1541
...|||..|||||||||||||||.||.||.||.|.||||||..|||..||
RBAM_032780__ 1492 GATGCCACTTACTCATCAAGCAATGGCGGTTACATGGAAGCCGGCGATGA 1541
BSNT_05428___ 1542 GGTATGGGG--CGGCAATGTTCCATATTTAATCGCCAAAGCGGATACATA 1589
.||.||||| || ||.||.||.||||||.|.||||||..|||||||.|
RBAM_032780__ 1542 AGTGTGGGGATCG--AAAGTGCCGTATTTAGTAGCCAAAAAGGATACAAA 1589
BSNT_05428___ 1590 TGACCCGAAAACCAGCTGGTCGATATCTTTGAATAAAACGCAGATCAAC- 1638
.||.|||.|||.|||||||||..||.|.|||.|.|| |||| ||.|
RBAM_032780__ 1590 AGATCCGGAAATCAGCTGGTCTTTAACATTGCAGAA---GCAG--CAGCT 1634
BSNT_05428___ 1639 ACCAGCGGCT-TAAATCTGA--------GCAGCCCTAGCACTTGGTGG-- 1677
.|||||||.| |..||.||| |||.|| ||||||
RBAM_032780__ 1635 GCCAGCGGGTCTGGATATGAAAAATCCCGCATCC--------TGGTGGTC 1676
BSNT_05428___ 1678 --AATTCGACTAATGAAACGAACTCCGC-CTATTTATCGGGACTGAAAAG 1724
|| ||.||.|||.|.||..|||| |...|.|.| |||.|.||||.
RBAM_032780__ 1677 TAAA----ACAAACGAAGCAAATGCCGCGCAGCTCAAC-GGAATAAAAAA 1721
BSNT_05428___ 1725 CTGGTTTATGACCAATAAATATCCTAGTGCGGAATCTATTAAGAT-CACG 1773
.|||.|.||||..||||||.|..|.|.||| |||.| ||..
RBAM_032780__ 1722 TTGGCTGATGAAAAATAAAGAAACCAATGC----------AAGTTCCATA 1761
BSNT_05428___ 1774 AAAATCTCAAGC----CTGAGC-CT-GAGCAGTGCAAAAACTGCCGGTCA 1817
|||||..||||| ||||.| || |..||..|.||||||....||.||
RBAM_032780__ 1762 AAAATTGCAAGCATCTCTGATCTCTCGCTCACCGGAAAAACAAAAGGCCA 1811
BSNT_05428___ 1818 GCG-GCCGAAAACAGCAGAGGTGAAGTTTTCTTACTTTGTCAAAGAAAAA 1866
||| ||.|||.|| ||.|.|||||||.|..|.|||..|||.||.||.||.
RBAM_032780__ 1812 GCGCGCGGAAGAC-GCCGCGGTGAAGGTCACGTACCATGTGAATGACAAG 1860
BSNT_05428___ 1867 TCAAATGGCTATGTTCTGTCAAACGGAAAACT-------TTCAGAAAAAA 1909
||.||.||||||||..|| ||| ||.||| ||.||
RBAM_032780__ 1861 TCGAAAGGCTATGTCATG---AAC--AAGACTGCATCTGTTGAG------ 1899
BSNT_05428___ 1910 CAGCGACGATTTCCGTGACGACGACTCAATTAAGATCGATGTT--GGGCG 1957
||||...||.||.||.|.||..|||||.| |.||.
RBAM_032780__ 1900 --------------GTGAAAGCGTCTGAACTCAGGACGATGATCGGAGCT 1935
BSNT_05428___ 1958 GCATGAATATGAAGAGCACGTATGC---------------TTCTT----T 1988
.||| .|.|.||.|||||.||.|| ||||| .
RBAM_032780__ 1936 TCAT--CTTTTAAAAGCACATACGCCAGTGCGTCCGGTAATTCTTCGCAA 1983
BSNT_05428___ 1989 ATCAAACAATACGAACGCTTTTATTCTCAGCGGTAAAGGATTCGGCCACG 2038
||| |||| |.||| ||.||.||||.|||.||||
RBAM_032780__ 1984 ATC-------ACGA----------TATCA--GGAAAGGGATACGGTCACG 2014
BSNT_05428___ 2039 GAATCGGCATGAGTCAGTATGGAGCAAATGCCAGAGCTGCTGCCGG---G 2085
|..|.||.||||||||.||.||||||||.|..|||||.|..||||| |
RBAM_032780__ 2015 GCGTAGGAATGAGTCAATACGGAGCAAAAGAAAGAGCGGAGGCCGGAGAG 2064
BSNT_05428___ 2086 CACGATTACAAGAAGATTTTAAGT-------TTCTATTATCCAAATACGA 2128
| ||..||| ||.|| | ||||||||.||.|||||..
RBAM_032780__ 2065 C-CGTATAC-------TTCTA--TTCTTGCGTTCTATTACCCTAATACAG 2104
BSNT_05428___ 2129 CTCTATCAAGCTATTAA 2145
|.||..|||.|||.|||
RBAM_032780__ 2105 CACTTACAAACTACTAA 2121
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