Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04172 and RBAM_025660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04172___yshC.1.9828.seq
# -bsequence dna-align/RBAM_025660___yshC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04172___yshC-RBAM_025660___yshC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04172___yshC-RBAM_025660___yshC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04172___yshC
# 2: RBAM_025660___yshC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1734
# Identity: 1359/1734 (78.4%)
# Similarity: 1359/1734 (78.4%)
# Gaps: 42/1734 ( 2.4%)
# Score: 5290.0
#
#
#=======================================
BSNT_04172___ 1 ATGCATAAAAAAGATATTATCCGGCTGCTTGAAACCATTGCAGTCTATAT 50
|||||||||||||||||.|||.|||||||||||||.|||||.||||||||
RBAM_025660__ 1 ATGCATAAAAAAGATATCATCAGGCTGCTTGAAACGATTGCGGTCTATAT 50
BSNT_04172___ 51 GGAACTAAAAGGGGACAACCCGTTTAAAGTATCCGCCTTTCGAAAAGCGG 100
||||||.|||||||||||||||||||||.||||.|||||.||||||||||
RBAM_025660__ 51 GGAACTGAAAGGGGACAACCCGTTTAAAATATCAGCCTTCCGAAAAGCGG 100
BSNT_04172___ 101 CGGCAGCCCTGGAACAGGACGACCGAAGCTTATCAGAAATGGACGATATG 150
|.||.||.||.||.|||||.|||||.|||.|.||.|||||.|||||.|||
RBAM_025660__ 101 CAGCGGCGCTTGAGCAGGATGACCGCAGCCTGTCGGAAATCGACGACATG 150
BSNT_04172___ 151 ATGTCGCTGTCCGGCATTGGAAAAGGAACGTACAGCGTCATTAAAGAGTA 200
|||||..|.|||||.||.||||||||.||.|||.||||||||...||.||
RBAM_025660__ 151 ATGTCTTTATCCGGAATCGGAAAAGGCACCTACGGCGTCATTCGTGAATA 200
BSNT_04172___ 201 TATAGATGAAGGAAAGTCAAGCACG---CTCGAATCGCTTCAGAAAGAAG 247
|||..|.|||||...|||..||||| |||.||| |.||||||||||
RBAM_025660__ 201 TATGCAGGAAGGTGTGTCCGGCACGCTTCTCCAAT---TGCAGAAAGAAG 247
BSNT_04172___ 248 TGCCGGAAGGACTCGTGCCTTTATTGAAGCTGCCGGGGCTCGGCGGCAAA 297
|.||||||||..|.||.|||.|.||||||||.|||||.||||||||||||
RBAM_025660__ 248 TTCCGGAAGGCTTGGTTCCTCTTTTGAAGCTTCCGGGCCTCGGCGGCAAA 297
BSNT_04172___ 298 AAAATCGCAAAGCTATATAAAGAGCTCGGCGTACATGATGCAGAATCTCT 347
||||||||.|||||.|||.|.||.||.|||||.|||||.||.|||||.||
RBAM_025660__ 298 AAAATCGCCAAGCTGTATCAGGAACTGGGCGTTCATGACGCGGAATCGCT 347
BSNT_04172___ 348 GAAGGAAGCCTGTGAACAGCAAAAGGTACAAGGTCTTGCGGGCTTCGGCA 397
|||.|||||.||.||.||||||||.|||||.||.||.||.||.|||||||
RBAM_025660__ 348 GAAAGAAGCATGCGAGCAGCAAAAAGTACAGGGGCTCGCCGGTTTCGGCA 397
BSNT_04172___ 398 AAAAATCGGAAGAAAAAATATTACAGGCGCTCGGGGAAGCCGGAAAACAG 447
|||||.||||.||.|||||..|.|||||.|||||.|||||||||||||||
RBAM_025660__ 398 AAAAAACGGAGGAGAAAATCCTCCAGGCTCTCGGAGAAGCCGGAAAACAG 447
BSNT_04172___ 448 CCTGAACGGTTCCCGATCGGCTACGCCCTCCGGATCGCGCGGGAAATTGA 497
||.||||||||.|||||||||||.||.|||.|.||.||....|.||||||
RBAM_025660__ 448 CCGGAACGGTTTCCGATCGGCTATGCGCTCAGCATTGCTTCAGTAATTGA 497
BSNT_04172___ 498 GGAGCATCTTTCTCAATTTACGCATATCATC--AAATTTTCTCGTGCCGG 545
.||.|||.|..|.|...|.|||.|||| || ||||.|||.||.|||||
RBAM_025660__ 498 AGAACATTTGGCCCGGCTGACGGATAT--TCAGAAATATTCCCGGGCCGG 545
BSNT_04172___ 546 AAGTCTCCGCAGAGCGCGGGAAACGGTGAAGGATCTGGATTATATCATTG 595
.||||||.|.||||||||||||||.||.||.|||||.|||||.||.||.|
RBAM_025660__ 546 CAGTCTCAGAAGAGCGCGGGAAACCGTAAAAGATCTCGATTACATTATCG 595
BSNT_04172___ 596 CTACAGATCATCCGGCTGAAGTAAGAGAGCAGCTTCTTGAGCTGCCAAAC 645
|||||||||||||||..|..||.|||||.|||||||||...||.||.|||
RBAM_025660__ 596 CTACAGATCATCCGGAGGCTGTCAGAGAACAGCTTCTTTCCCTCCCGAAC 645
BSNT_04172___ 646 ATCAAAAG-CGTGATCGCAAGCGGAGATACGAAGGTGTCCGTCATCCTTT 694
.| ||||| ||||||.||.|||||.|||||.||.||.||..|||||||..
RBAM_025660__ 646 GT-AAAAGACGTGATAGCGAGCGGGGATACAAAAGTATCACTCATCCTGA 694
BSNT_04172___ 695 CCTTTGAATATGAAACAAGCGTCGATTTCCGTCTTGTGACGGAAGAGCAG 744
|||||||||||||.|..||.||.||||||||.||||||||.||.||.|||
RBAM_025660__ 695 CCTTTGAATATGAGATGAGTGTGGATTTCCGGCTTGTGACAGAGGAACAG 744
BSNT_04172___ 745 TTTCCGACAACACTCCATCATTTTACGGGATCAAAGGATCACAATATTAA 794
|||.|.||.|||||.|||||||||||.||.||.||.||||||||.|||||
RBAM_025660__ 745 TTTGCCACCACACTGCATCATTTTACCGGTTCTAAAGATCACAACATTAA 794
BSNT_04172___ 795 AATGCGCCAAATCGCCAAAGAACGCGGCGAGCGGATCAGTGAATACGGCG 844
|||||||||..|.||.|||||.|||||.||.|||||||||||||||||.|
RBAM_025660__ 795 AATGCGCCAGCTGGCGAAAGAGCGCGGTGAACGGATCAGTGAATACGGAG 844
BSNT_04172___ 845 TTGAGACAGTTGAAACCGGAGAGATCAAAACATTTCCGAGTGAACGTGAA 894
|.||.||..|.|||||.|||||..||||||||||.|||||.||| |||
RBAM_025660__ 845 TAGAAACCATAGAAACGGGAGACGTCAAAACATTCCCGAGCGAA---GAA 891
BSNT_04172___ 895 ---TTTTATGCGCACTTCGGCCTGCCGCTGATTCCGCCGGAAATTCGTGA 941
|||||.||.||||||||.||||||.|.|||||.||.||..|..|.||
RBAM_025660__ 892 GCGTTTTACGCCCACTTCGGTCTGCCGTTTATTCCTCCTGAGCTCAGAGA 941
BSNT_04172___ 942 AAGCGGACAGGAAGTGGAAACCTACAGCGACAGCATTGAACTGAT----- 986
||||||.|||||.||.||.||.|||.|.|| || .|||.|||
RBAM_025660__ 942 AAGCGGGCAGGAGGTCGACACGTACCGGGA-AG----AAACGGATCTTGT 986
BSNT_04172___ 987 -----AGAACCCGGGCAAATCAAAGGTGATCTCCACATGCACTCAACGTG 1031
|.||..|| ||.|||||.||||||||||||||||||.|.||
RBAM_025660__ 987 GGAGCATAAAGCG-----ATAAAAGGCGATCTCCACATGCACTCAGCCTG 1031
BSNT_04172___ 1032 GAGCGATGGTGCATTTTCGATCAGAGAGATGGCTGAAGCCTGCATCAAAA 1081
|||.||.||.||.|||||.||||||||.|||||.|||||.||.||...||
RBAM_025660__ 1032 GAGTGACGGCGCTTTTTCCATCAGAGAAATGGCAGAAGCGTGTATGGCAA 1081
BSNT_04172___ 1082 AAGGCTATCAATACATGGCGATCACCGATCATTCACAATATTTAAAGGTC 1131
||||||||||.|||||||||||||||||.|||||.||||||||||||||.
RBAM_025660__ 1082 AAGGCTATCAGTACATGGCGATCACCGACCATTCCCAATATTTAAAGGTA 1131
BSNT_04172___ 1132 GCCAACGGCCTTACTGCAGAAAGACTTAAGCAGCAGGCAAAAGAAATTGA 1181
||||||||..|.||.||.|||.|.||.||..|.|||||..||||||||||
RBAM_025660__ 1132 GCCAACGGGTTAACGGCCGAACGGCTCAAAAAACAGGCGGAAGAAATTGA 1181
BSNT_04172___ 1182 CGCACTGAATGCAGAGTTTGAAAACTTCCGTATTTTGAAAGGCGTTGAGA 1231
|||..|.|||||.||.||||||||.||.|.||||||.||||||||.||.|
RBAM_025660__ 1182 CGCGTTAAATGCTGAATTTGAAAATTTTCATATTTTTAAAGGCGTAGAAA 1231
BSNT_04172___ 1232 TGGATATCCTGCCTGACGGTACGCTCGATTATGATGACGATATGCTTGCG 1281
||||.||.||.||.||||||.|||||||||||||||||..|.|.||..|.
RBAM_025660__ 1232 TGGACATTCTCCCCGACGGTTCGCTCGATTATGATGACAGTGTTCTGTCT 1281
BSNT_04172___ 1282 GAAATGGATATCGTTATTGCATCGATTCATTCCAGTTTTAATCAGCCGGA 1331
|||||||||.|.||.||.|||||.||||||||.||.||.|..||||||||
RBAM_025660__ 1282 GAAATGGATCTTGTCATCGCATCTATTCATTCAAGCTTCAGCCAGCCGGA 1331
BSNT_04172___ 1332 ACACGTGATTATGAAACGGCTTGAGAC-GGCACTGACAAACAAGCATGTT 1380
|||.||.||||||||||||||||| || |||.|||||.||.|||||.||.
RBAM_025660__ 1332 ACATGTCATTATGAAACGGCTTGA-ACAGGCGCTGACGAATAAGCACGTG 1380
BSNT_04172___ 1381 GACATTATCGCACACCCGACCGGGCGCCTTATCGGCAGACGGGCCGGTTA 1430
|||||||||||.||||||||.||.|||||.|||||||||||||||||.||
RBAM_025660__ 1381 GACATTATCGCCCACCCGACGGGACGCCTGATCGGCAGACGGGCCGGCTA 1430
BSNT_04172___ 1431 CGAAATCGATATTGATCA-GCTGATTGAGCTTGCGAGGAAAACAAATACG 1479
.|||.||||.||.|| || |||||||||.||.||....||||||||||||
RBAM_025660__ 1431 TGAAGTCGACATCGA-CATGCTGATTGAACTCGCCGCCAAAACAAATACG 1479
BSNT_04172___ 1480 GCGCTTGAACTTAACGCCAACCCTGCGCGCCTTGATCTGCGCACAGAGCA 1529
|||||||||||.||.||.|||||.||||||||.|||.|.||.||.|||||
RBAM_025660__ 1480 GCGCTTGAACTGAATGCAAACCCCGCGCGCCTCGATTTACGGACTGAGCA 1529
BSNT_04172___ 1530 TTTAATGAAAGCAAACGAACAAGGGGTTACATTGGTGATTAATACTGATG 1579
..|.||.||||||||.|||.||||.||.||..||||.||||||||.||||
RBAM_025660__ 1530 CCTGATCAAAGCAAATGAAAAAGGTGTGACTCTGGTCATTAATACCGATG 1579
BSNT_04172___ 1580 CCCATAATATTGAGATGTTAGACGATATGAAAACTGGCGTTACTGCCGCG 1629
||||||||||.||||||.|.||.|||||||||||.|||||.||.||.|||
RBAM_025660__ 1580 CCCATAATATCGAGATGCTCGATGATATGAAAACGGGCGTGACCGCTGCG 1629
BSNT_04172___ 1630 CGCAAAGGATGGACGGAAACGAAAAACGTTCTGAATGCCCGGTCGCTTAA 1679
||||||||.|||||||||||.|||.|.||..|.||.||||||.||||..|
RBAM_025660__ 1630 CGCAAAGGCTGGACGGAAACAAAACATGTGTTAAACGCCCGGCCGCTACA 1679
BSNT_04172___ 1680 AGACGTAGAGGTATTTCTGAAGCGCAACGATTAA 1713
.||.||..|.|.||||||||.||||||.||||||
RBAM_025660__ 1680 CGAGGTCAAAGCATTTCTGACGCGCAATGATTAA 1713
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.