Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04003 and RBAM_024700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_04003___yrvI.1.9828.seq
# -bsequence dna-align/RBAM_024700___yrvI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04003___yrvI-RBAM_024700___yrvI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04003___yrvI-RBAM_024700___yrvI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04003___yrvI
# 2: RBAM_024700___yrvI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 448
# Identity: 352/448 (78.6%)
# Similarity: 352/448 (78.6%)
# Gaps: 11/448 ( 2.5%)
# Score: 1378.0
#
#
#=======================================
BSNT_04003___ 1 ATGAGATTAGTTGTTCAGCGAGTAACAGAAGCAAGCGTTACAGTGGACGA 50
||||.|||||||||||||||.|||||||||||.||.||.||.||.||.|.
RBAM_024700__ 1 ATGAAATTAGTTGTTCAGCGTGTAACAGAAGCGAGTGTGACGGTTGAGGG 50
BSNT_04003___ 51 AGAGGTCGTCGGCCAAATTGGACAAGGCCTCATGGTGCTGGTCGGCATCA 100
.|..||||.|||||..||.||||..||..|.||||.|||.||||||||||
RBAM_024700__ 51 CGCTGTCGCCGGCCGGATCGGACCCGGTATTATGGCGCTTGTCGGCATCA 100
BSNT_04003___ 101 CTCATGATGATACAGAAGATGATGCAGCTTATTTAGCCGATAAAGTTGTC 150
|||||||.|||||||||||.|||||.|||||.||.||.||||||.|.||.
RBAM_024700__ 101 CTCATGAAGATACAGAAGAAGATGCCGCTTACTTGGCGGATAAAATCGTG 150
BSNT_04003___ 151 AATCTCCGTATTTTCGATGACAGTGAA---GGAAAAATGAATCTGTCTCT 197
|||||.||.|||||.||||| |||| ||.||.||||||.|.||.||
RBAM_024700__ 151 AATCTTCGGATTTTTGATGA---TGAAAGCGGCAAGATGAATTTATCGCT 197
BSNT_04003___ 198 TGTAGATATAGGAGGAGAGATTTTATCCGTCTCACAGTTTACGCTTTATG 247
|.|.||||..||.||.||||||||||||||.|||||||||||||||||.|
RBAM_024700__ 198 TTTGGATACGGGCGGGGAGATTTTATCCGTTTCACAGTTTACGCTTTACG 247
BSNT_04003___ 248 GAGATACGAAAAAAGGGCGCCGGCCGAACTACATGAACGCGGCCAAACCT 297
|.||.|||||.||||||.|.||.|||||.|..|||||.|||||.|||||.
RBAM_024700__ 248 GCGAAACGAAGAAAGGGAGACGCCCGAATTTTATGAATGCGGCTAAACCG 297
BSNT_04003___ 298 GATAAAGCTTTAGGT-CTTTATGAAAAATGGAATGACCTGCTTCGTGAAA 346
|||.|.|||.| |.| |||||||||||.|||||.||.||.|||||.||||
RBAM_024700__ 298 GATCAGGCTGT-GCTCCTTTATGAAAAGTGGAACGAACTCCTTCGGGAAA 346
BSNT_04003___ 347 AAGGAATCAAAGTGGAGACCGGAACGTTTGGAGCAATGATGGATGTTCAG 396
|||||.||||||||||.|||||||..||.|||||.|||||||||||||||
RBAM_024700__ 347 AAGGAGTCAAAGTGGAAACCGGAATATTCGGAGCCATGATGGATGTTCAG 396
BSNT_04003___ 397 CTTACAAACTCCGGACCGGTTACGCTCATTATGGATTCAAAATAA--- 441
||.||.||.|||||.|||.||||..|.|||||||||||.|||.||
RBAM_024700__ 397 CTGACGAATTCCGGGCCGATTACATTGATTATGGATTCTAAACAATAA 444
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