Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02717 and RBAM_016580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_02717___spoVFB.1.9828.seq
# -bsequence dna-align/RBAM_016580___spoVFB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02717___spoVFB-RBAM_016580___spoVFB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02717___spoVFB-RBAM_016580___spoVFB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02717___spoVFB
# 2: RBAM_016580___spoVFB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 457/611 (74.8%)
# Similarity: 457/611 (74.8%)
# Gaps: 28/611 ( 4.6%)
# Score: 1710.0
#
#
#=======================================
BSNT_02717___ 1 ATGTCGTCATTAAAAGGAAAAAGAATCGGGTTTGGGCTGACCGGGTCGCA 50
||||| || |.|||||.|||||||||||.||.||..|.|||||.|||||
RBAM_016580__ 1 ATGTC-TC--TGAAAGGGAAAAGAATCGGATTCGGATTAACCGGCTCGCA 47
BSNT_02717___ 51 TTGCACATATGAAGCGGTTTTCCCGCAAATTGAGGCGTTGGTCAATGAAG 100
||||||||||||.|..|||||.||||||||.||||||.|..|||.|.|||
RBAM_016580__ 48 TTGCACATATGAGGAAGTTTTTCCGCAAATAGAGGCGCTTATCAGTCAAG 97
BSNT_02717___ 101 GAGCTGAAGTCCGTCCGGTTGTCACATTTAATGTAAAATCCACAAATACC 150
|||||||||||||.|||||.||.||||..|..||..||||.||..|||||
RBAM_016580__ 98 GAGCTGAAGTCCGGCCGGTCGTGACATCAACCGTTCAATCGACCGATACC 147
BSNT_02717___ 151 CGATTTGGAGAGGGCGCAGAATGGGTTAAAAAAATTGAAGACCTGACTGG 200
||.|||||.|||||.|.|||.|||||.|.||||||||||||....||.||
RBAM_016580__ 148 CGCTTTGGGGAGGGGGGAGATTGGGTCAGAAAAATTGAAGAAGCAACAGG 197
BSNT_02717___ 201 ATATGAGGCCATTGATTCGATTGTAAAGGCAGAACCTCTTGGACCGAAGC 250
.|.||||||.||||||||.||.|||||.||.||.|||||.||.||.||.|
RBAM_016580__ 198 CTTTGAGGCGATTGATTCCATCGTAAAAGCGGAGCCTCTCGGGCCAAAAC 247
BSNT_02717___ 251 TGCCCCTTGACTGCATGGTCATTGCGCCTTTAACAGGCAATTCAATGAGC 300
|.||.||.||||||||||||||.||.||||||||.||.||||||||||||
RBAM_016580__ 248 TTCCGCTCGACTGCATGGTCATCGCCCCTTTAACCGGAAATTCAATGAGC 297
BSNT_02717___ 301 AAGCTGGCAAATGCCATGACGGACAGCCCGGTGCTGATGGCGGCAAAAGC 350
||.||.||||||||.|||||.||||||||.||.||.|||||.||.|||||
RBAM_016580__ 298 AAACTCGCAAATGCGATGACTGACAGCCCCGTCCTTATGGCTGCGAAAGC 347
BSNT_02717___ 351 GACAATCCGGAACAATCGGCCTGTCGTTCTGGGTATCTCGACAAATGATG 400
.||.|||||.|||...||.||.|||||.||.||.||.||||||||.||.|
RBAM_016580__ 348 CACGATCCGCAACGGCCGCCCGGTCGTGCTCGGAATTTCGACAAACGACG 397
BSNT_02717___ 401 CTCTTGGTTTAAACGGAACAAATTTAATGAGGCTCATGTCAACAAAAAAT 450
..||.||||||||||||||.||.|||||||||||.|||||..|||||||.
RBAM_016580__ 398 GACTCGGTTTAAACGGAACGAACTTAATGAGGCTGATGTCCGCAAAAAAC 447
BSNT_02717___ 451 ATCTTTTTTATTCCATTCGGGCAAGATGATCCA-TTTAAAAAACCGAATT 499
||.|.|||.||.||.|||||.||.||.|| ||| .|.||||||||||..|
RBAM_016580__ 448 ATATATTTCATCCCGTTCGGCCAGGACGA-CCACGTGAAAAAACCGACAT 496
BSNT_02717___ 500 CAATGGTAGCCAAAATGGATCTGCTACCGCAAACGATTGAAAAGGCACTC 549
|..|.||.||||.|||||||||.||.|||...|||.|.|||||.||.||.
RBAM_016580__ 497 CGCTCGTCGCCAGAATGGATCTCCTTCCGATTACGGTAGAAAAAGCTCTT 546
BSNT_02717___ 550 ATGCACCAGCAGCTTCAGCCGATTCTAGTTGAGAATTATCAGGGAA---- 595
.|||||||||||.||||||||.|.||.|| |
RBAM_016580__ 547 TTGCACCAGCAGGTTCAGCCGGTGCTCGT----------------ACACC 580
BSNT_02717___ 596 ---ATGACTAA 603
||||.|||
RBAM_016580__ 581 ACCATGAATAA 591
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