Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02572 and RBAM_015460

See Amino acid alignment / Visit BSNT_02572 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:23
# Commandline: needle
#    -asequence dna-align/BSNT_02572___ylnF.1.9828.seq
#    -bsequence dna-align/RBAM_015460___ylnF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02572___ylnF-RBAM_015460___ylnF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02572___ylnF-RBAM_015460___ylnF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02572___ylnF
# 2: RBAM_015460___ylnF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity:     346/523 (66.2%)
# Similarity:   346/523 (66.2%)
# Gaps:          68/523 (13.0%)
# Score: 965.5
# 
#
#=======================================

BSNT_02572___      1 ATGCTTCCGCTGCACATT------AGCCTGGAAAAGAAGAAGGTTGTGAT     44
                     |||||.||.|||||||||      |||  |||||  |||||  ||.|.||
RBAM_015460__      1 ATGCTGCCTCTGCACATTAATTTAAGC--GGAAA--AAGAA--TTATCAT     44

BSNT_02572___     45 TGCGGGGGGCGGCAGCATCGCTCTCAGAAGGCTGAAATCGGTGATTTCTG     94
                     .|||||.||.||||...|.||..|.||||||||.|||.|||||.||.|.|
RBAM_015460__     45 CGCGGGCGGAGGCAATGTTGCCTTAAGAAGGCTCAAAACGGTGCTTCCGG     94

BSNT_02572___     95 AGGGAGCTGATATAACGCTCGTCAGTCCGGATG--TTGAACCGGAAATCA    142
                     |.||.||.|||||.||..|..|||||||.||||  .||  ||.|||||.|
RBAM_015460__     95 AAGGCGCGGATATTACTGTAATCAGTCCCGATGCCCTG--CCCGAAATTA    142

BSNT_02572___    143 AGCAAATGGCAGAAGAGCGACGTATCAAATGGGAAAAACGGACAATTGAA    192
                     |.||..||||.||.||..|.||.|||...||||.....||.|.||||| |
RBAM_015460__    143 AACAGCTGGCGGATGAAGGGCGCATCCGCTGGGTTTCCCGTAAAATTG-A    191

BSNT_02572___    193 AAAGAAGATTATCTC---AATGCTTTCTTCATTATTGCTGCGACGGAT-A    238
                     ||.||||  .|||||   ...|||||.|||||.|||||.|||||..|| |
RBAM_015460__    192 AATGAAG--GATCTCGCGCCCGCTTTTTTCATCATTGCCGCGACAAATGA    239

BSNT_02572___    239 ATGCGGCAGTGAACAAAGAAATTGCC-CAATCCGCTTCGCCTTTT-----    282
                     .|||.|| |||||..|.||.||.||| |.| .||||||      |     
RBAM_015460__    240 CTGCAGC-GTGAATCAGGAGATAGCCGCGA-GCGCTTC------TGAAAC    281

BSNT_02572___    283 -CAGCTTGTCAATTGTGTCAGTGACGCTGAGCTTGGCAATGTATATATGC    331
                      |||||.|||||||||||.||.||.|||||.|..||||..||.|||||||
RBAM_015460__    282 GCAGCTGGTCAATTGTGTAAGCGATGCTGAACAGGGCAGCGTGTATATGC    331

BSNT_02572___    332 CGAAAATTGTC--AAAAGAGGGCATGTCACTGTGTCTGTTTCTACAAGCG    379
                     ||||.||..||  .||||.|.|||| ||| .||.||.||.||.|||||||
RBAM_015460__    332 CGAAGATCATCCGCAAAGGGCGCAT-TCA-AGTATCCGTATCAACAAGCG    379

BSNT_02572___    380 GAGCCAGTCCAAAGCAC--ACGAAAGAG-CTTGCTGAAAACGTGGATA-A    425
                     |.||.||.||  .||||  |||||| || ||.|||||..||    ||| |
RBAM_015460__    380 GCGCAAGCCC--GGCACATACGAAA-AGACTGGCTGAGGAC----ATAGA    422

BSNT_02572___    426 G---CTGATTGACGGC-GATTTTATTGCTGAAGTGAACAGGCTTTATCAG    471
                     |   ||.||| ||.|| ||||   |.||||||  |||..||.|..||.|.
RBAM_015460__    423 GCCTCTCATT-ACTGCTGATT---TGGCTGAA--GAAGTGGATCGATTAT    466

BSNT_02572___    472 GTGAG-AAGGAAGAA----ATAA    489
                     .|||| ||.||||||    ||||
RBAM_015460__    467 TTGAGAAAAGAAGAAGACTATAA    489


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