Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02100 and RBAM_012430

See Amino acid alignment / Visit BSNT_02100 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02100___yjnA.1.9828.seq
#    -bsequence dna-align/RBAM_012430___yjnA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02100___yjnA-RBAM_012430___yjnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02100___yjnA-RBAM_012430___yjnA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02100___yjnA
# 2: RBAM_012430___yjnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     573/781 (73.4%)
# Similarity:   573/781 (73.4%)
# Gaps:          32/781 ( 4.1%)
# Score: 2012.0
# 
#
#=======================================

BSNT_02100___      1 ATGAGTGTAAGCATCATATTGATGGGTTTGTTTGTCGGAGC-CTTAGTCG     49
                     ||||.|||||||||..|.||.||||||||.|||||||||.| ||| ||||
RBAM_012430__      1 ATGACTGTAAGCATTGTGTTTATGGGTTTCTTTGTCGGAACGCTT-GTCG     49

BSNT_02100___     50 GATTGACGGGAGTGGGTGGAGCGGC-CTTATTAACTCCCCTTTTA---AT     95
                     ||||||||||.|||||.|||||.|| ||| ||.|||||   ||||   ||
RBAM_012430__     50 GATTGACGGGTGTGGGAGGAGCAGCGCTT-TTGACTCC---TTTACTGAT     95

BSNT_02100___     96 TGTGCTTGGAATTAATCCTTCCATCGCGGTCGGTACAGATCTTGTATATA    145
                     .||..|.||.||.||.||.||.|||||.|||||.||.||.|||.||||||
RBAM_012430__     96 CGTTTTGGGGATCAACCCCTCAATCGCCGTCGGCACTGACCTTTTATATA    145

BSNT_02100___    146 ACTCGATCACAAAGCTGTTTGGCGTTGCCTCCCATTGGCGGCAGAAAACG    195
                     ||||.|||||.||.|||||.||.||.|..||.||||||..||||...||.
RBAM_012430__    146 ACTCCATCACCAAACTGTTCGGTGTCGTTTCTCATTGGAAGCAGCGCACC    195

BSNT_02100___    196 ATTAACTTTAAA----TTGGTAAAATACTTAGCCATCGGCAGTATTCCGA    241
                     .||.|.||||||    |.|||    |||||.||..||||.||.|||||.|
RBAM_012430__    196 GTTCAATTTAAACTTGTCGGT----TACTTGGCGCTCGGAAGCATTCCCA    241

BSNT_02100___    242 GTGCTTCGCTA-----GCCATTGG-CATCTTGCATTTGTTCCCCGCCTTT    285
                     |     |||.|     |||||.|| ..|||| ||.|||||.|||||.|||
RBAM_012430__    242 G-----CGCAACAGCCGCCATCGGTGTTCTT-CACTTGTTTCCCGCTTTT    285

BSNT_02100___    286 CACCAGCATCAGGAAGAAATTATTAAGCACGCTCTAGGATATGTGTTAAC    335
                     ||||||||||||||..|.|||||.||.||.||.||.||.||.||..|.||
RBAM_012430__    286 CACCAGCATCAGGAGCAGATTATCAAACAGGCGCTCGGCTACGTACTGAC    335

BSNT_02100___    336 GCTGGTTGCCATTTCAATCATCGTTCGTTTGTTTTTGGATAGAAAACTTC    385
                     .||.||.||||||||.||.||||..||..|.|||||.||||.||||||.|
RBAM_012430__    336 CCTTGTCGCCATTTCCATTATCGCCCGCCTTTTTTTCGATAAAAAACTGC    385

BSNT_02100___    386 GTCCCAACCGCTGGCAGCTGATGCCGCTTGAAAATAAGCGGGCGCTGACG    435
                     |.||.|||||||||||||..|...||||||||.|.||||||.|.||.|.|
RBAM_012430__    386 GGCCGAACCGCTGGCAGCAAAAAACGCTTGAAGAAAAGCGGACACTCATG    435

BSNT_02100___    436 ATTCTTATTGGTGTTGTGTTTGGGTTTATCGTCGGCTTAACATCAATCGG    485
                     ||..|.||.||.||..|.||.||.||.|||||||||.|.|||||.||.||
RBAM_012430__    436 ATATTGATCGGCGTCATTTTCGGCTTCATCGTCGGCCTGACATCTATTGG    485

BSNT_02100___    486 TTCTGGCTCATTATTTGCAATCGCCATGATTTACTTATTTAACATGAAAG    535
                     .||.||||||||||||||.|||||||||.|.|||.|.||.|..||||||.
RBAM_012430__    486 GTCCGGCTCATTATTTGCGATCGCCATGTTATACCTGTTCAGAATGAAAA    535

BSNT_02100___    536 CGTCACAGATTGTCGGAACCGATATCGCGCATGCATTTCTTCTTGTTACG    585
                     ||.||.|..|.||.|||||.||||||||.|||||.|||||.|||||.||.
RBAM_012430__    536 CGGCAGAAGTGGTGGGAACGGATATCGCACATGCCTTTCTGCTTGTAACT    585

BSNT_02100___    586 GCAGCAGGCATTTTGAACGCTAGCTTCGGAAGCGTGGATTACATGCTGGC    635
                     ||.||.||..|.||.|||||.||||||||||||||.||||||.||||.|.
RBAM_012430__    586 GCTGCCGGTCTGTTAAACGCAAGCTTCGGAAGCGTCGATTACCTGCTTGT    635

BSNT_02100___    636 AGCTAATCTGCTCATTGGTTCAATTCCCGGCGTGCTGATCGGAAGCCATC    685
                     |...||||||.|.||.||.||..|.||.||.|||||..||||.|| |.||
RBAM_012430__    636 ATTGAATCTGTTGATCGGCTCTGTGCCGGGTGTGCTTCTCGGCAG-CTTC    684

BSNT_02100___    686 -TTTCGCCTCGATTCTCCCCGCGTCCGCTGCAATTTATTATGGCGTCCAT    734
                      |||||||...||||||.|||||.||||||||.|||.|.||||||.|.||
RBAM_012430__    685 TTTTCGCCGAAATTCTCACCGCGCCCGCTGCAGTTTGTGATGGCGGCGAT    734

BSNT_02100___    735 TATTTTAGTCAGCGGTTTAAAATTGATTTAA    765
                     |||||||.|||||||..|||||||.||.|||
RBAM_012430__    735 TATTTTAATCAGCGGAATAAAATTAATATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02100 and RBAM_012430

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
