Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01865 and RBAM_011080

See Amino acid alignment / Visit BSNT_01865 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01865___yitS.1.9828.seq
#    -bsequence dna-align/RBAM_011080___yitS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01865___yitS-RBAM_011080___yitS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01865___yitS-RBAM_011080___yitS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01865___yitS
# 2: RBAM_011080___yitS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 873
# Identity:     654/873 (74.9%)
# Similarity:   654/873 (74.9%)
# Gaps:          42/873 ( 4.8%)
# Score: 2362.0
# 
#
#=======================================

BSNT_01865___      1 ATGACAGTTCATCTCATCGCTGACAGCGCCACTGATTTGCCTCGTTCTTA     50
                     |||||||||||.||.||.||||||||||||.||||..||||....|||||
RBAM_011080__      1 ATGACAGTTCACCTTATTGCTGACAGCGCCTCTGACCTGCCGAAATCTTA     50

BSNT_01865___     51 TTTTGAAGAAAAAGGCATTGGCTTTATTCCGCT-CAGGGTTTCTCTCGGC     99
                     |.||||||||||..|.||.||.||.|||||||| || .||..|.||.|.|
RBAM_011080__     51 TATTGAAGAAAACCGGATCGGGTTCATTCCGCTGCA-CGTAACACTTGAC     99

BSNT_01865___    100 GATAAAGAATTCGAAGATGCAGTCACAATTCATGCGGATCAAATATTTGA    149
                     |..||.||||..||.||..|.|||||.|||||.||||||||.||||||.|
RBAM_011080__    100 GGAAACGAATATGAGGACACGGTCACCATTCAGGCGGATCATATATTTCA    149

BSNT_01865___    150 AGCGATGCAAAATGGAGAAACG--CCTAAGACGTCGCAAGCCTCACCGCA    197
                     ||||||||...|.|| |||| |  ||.||.||.||.||.||.||||||.|
RBAM_011080__    150 AGCGATGCGGGACGG-GAAA-GTTCCGAAAACATCCCAGGCATCACCGGA    197

BSNT_01865___    198 CACGATTAAAAATGTGTTTTTGCAATATGCCGAAACAGGTGATCCCGCTC    247
                     .|||||.|||||.||.|||||.|||||.||.|||...||.||.||.||..
RBAM_011080__    198 TACGATAAAAAAAGTATTTTTACAATACGCGGAACTGGGAGAACCGGCGA    247

BSNT_01865___    248 TTTACATTGCCTTTTCCTCAGGTCTCTCCGGCACGTATCAGACAGCTGTC    297
                     |.|||||.|||||||||||||||||.||||||||.||||||||.||.||.
RBAM_011080__    248 TATACATCGCCTTTTCCTCAGGTCTTTCCGGCACCTATCAGACGGCCGTA    297

BSNT_01865___    298 ATGATCGCCAATGAAGTGAAGGAGGAATTCCCCGATTTCGATTTGCGGGT    347
                     |||||||||||||||||.||.||||||||.||||||||.|||||.|||.|
RBAM_011080__    298 ATGATCGCCAATGAAGTAAAAGAGGAATTTCCCGATTTTGATTTACGGAT    347

BSNT_01865___    348 CATTGATTCCAAATGCGCTTCATTAGGATACGGTCTGGCTGTCCAGCATG    397
                     ..|.||||||||||||||||||||.||.|.|||.||.||.||...|||.|
RBAM_011080__    348 TGTAGATTCCAAATGCGCTTCATTGGGCTGCGGCCTCGCGGTGATGCACG    397

BSNT_01865___    398 TTGCCG-----ATCTCTGTATCAACGGGAATACAATACAAGAAATTGAAA    442
                         ||     | ||||||.|.|||||||||||||||||||||||.||||
RBAM_011080__    398 ----CGCAAACA-CTCTGTGTTAACGGGAATACAATACAAGAAATCGAAA    442

BSNT_01865___    443 CGTCTGTAAAGAACTTTTGCAGC-CAGCTTGAACACATTTTTACCGTTGA    491
                     ||||||||||||.||||||| || |.|.|..||||.||.|||||.||.||
RBAM_011080__    443 CGTCTGTAAAGAGCTTTTGC-GCACGGATGAAACATATATTTACGGTCGA    491

BSNT_01865___    492 TGATTTAACATATCTCGCGAGGGGCGGCCGGATCTCCAAAACGTCCGCTT    541
                     ||||.|..|.|||||||||.||||||||.|.||.||.|||||||||||||
RBAM_011080__    492 TGATGTCGCTTATCTCGCGCGGGGCGGCAGAATTTCAAAAACGTCCGCTT    541

BSNT_01865___    542 TTGTCGGCGGCCTGTTGAATATTAAACCGCTGCTTCAGATGGAGGACGGC    591
                     |||||||.||.||.|||||.||.||||||.|.||.||..||||.||||||
RBAM_011080__    542 TTGTCGGGGGGCTTTTGAACATCAAACCGATTCTGCATGTGGATGACGGC    591

BSNT_01865___    592 AAGCTTGTGCCTCTGGAAAAAATCCGCGGACAGAAGAAACTTTTCAAACG    641
                     |.|||.|||||.||.||||||.|.||||||||.||||||||.||.|||||
RBAM_011080__    592 AGGCTCGTGCCGCTCGAAAAATTGCGCGGACAAAAGAAACTGTTTAAACG    641

BSNT_01865___    642 GATCATCG---AGCTTATGAAAGAGCGCGGGGATGATTTGAGC-AATCAA    687
                     |||.||.|   ||.|.|.|.||||..||||.||    |||.|| .|||||
RBAM_011080__    642 GATTATAGAAAAGATGAAGGAAGAAGGCGGCGA----TTGGGCGGATCAA    687

BSNT_01865___    688 ACCGTCGGGATCAGCTACGCCGCGAACAA--AGAAAAAGCCACGGAT--A    733
                     |||||.|||||||||||.||.|..|||.|  |||....||..|||||  |
RBAM_011080__    688 ACCGTGGGGATCAGCTATGCAGATAACGAGGAGACGGCGCTTCGGATGAA    737

BSNT_01865___    734 TGAAACACCTGATTGAGGAAGCGTTCAAGCCGAAAGAAATCATTATGCAT    783
                     .||||    |||||||.|||||||||.|.||||||||.||||||.|.|||
RBAM_011080__    738 GGAAA----TGATTGAAGAAGCGTTCCATCCGAAAGAGATCATTCTTCAT    783

BSNT_01865___    784 CCAATCAGTTCAGCAATCGGCTCGCATGCCGGTCCAGGTACATTGGCAAT    833
                     .|||||.|.||.||.||||||.||||..||||.||.||.||..|.||.||
RBAM_011080__    784 TCAATCGGCTCTGCGATCGGCGCGCACTCCGGGCCGGGCACGCTCGCGAT    833

BSNT_01865___    834 ATTCTTT--TTAAG--AAAATGA    852
                      ||.|||  |.|||  |.||   
RBAM_011080__    834 -TTTTTTCCTGAAGCCATAA---    852


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01865 and RBAM_011080

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
