Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01538 and RBAM_009360
See
Amino acid alignment /
Visit
BSNT_01538 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01538___yhcI.1.9828.seq
# -bsequence dna-align/RBAM_009360___yhcI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01538___yhcI-RBAM_009360___yhcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01538___yhcI-RBAM_009360___yhcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01538___yhcI
# 2: RBAM_009360___yhcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity: 675/977 (69.1%)
# Similarity: 675/977 (69.1%)
# Gaps: 64/977 ( 6.6%)
# Score: 2239.0
#
#
#=======================================
BSNT_01538___ 1 ATGCTTAATTTGATTTATAATGAGTGGCTCAAAATTTTCAGCCGTGCCGG 50
|||.||||..||||.||||||||.|||.|.||||||||||||||.|.|||
RBAM_009360__ 1 ATGTTTAAGCTGATCTATAATGAATGGATAAAAATTTTCAGCCGCGTCGG 50
BSNT_01538___ 51 AACATGGGTGATGATCGGAATTCTGGGGCTGACAATGGTTGGATTTGCAT 100
.||.||||..|||||.|.||||.|.||..|..|.|||.|.||.|||||..
RBAM_009360__ 51 CACGTGGGCTATGATTGTAATTTTAGGCGTTTCGATGATCGGTTTTGCGC 100
BSNT_01538___ 101 TTTTGGCGAATCATTTTTCTGCTGGTGAATCAAATTCCCATTGGAAACAA 150
||.||.|.||.|||||..|..|..|.|||.|.|.|.|..||||||||||.
RBAM_009360__ 101 TTCTGTCAAACCATTTCACCTCGAGCGAAGCCAGTCCGAATTGGAAACAG 150
BSNT_01538___ 151 GAACTTCAAGCACAAAACGCCGAATTAAA---------GAAAGAAATC-- 189
||.||.||.||..|||||...|||.|.|| |||.||||.|
RBAM_009360__ 151 GAGCTCCAGGCCGAAAACAAAGAAATGAAACAGCAGATGAAGGAAACCGG 200
BSNT_01538___ 190 -AA--AGAAGATCCTTCA----CTGAAAGA-----TGGGTATAAAGAAAC 227
|| |||.|.||.||.| ||||||.| |.|..|||||
RBAM_009360__ 201 AAACCAGACGCTCATTGATAACCTGAAACAGAATGTCGCGATAAA----- 245
BSNT_01538___ 228 AATCACACTCAACGACTATCGCATCGAGCATAATATCCCT-AGTGACACG 276
|||| ||.||.||.||.|||||.|||||| || ||.||.
RBAM_009360__ 246 --------TCAA----TACCGTATGGATCATAACATCCCTGAG-GATACA 282
BSNT_01538___ 277 GGCTATACGGTATGGTCTTATGTAACGGATTCAGCAA-----AC--TTTA 319
||.||.||.||.|||||.||.|||.|.|||||..|.| || |||
RBAM_009360__ 283 GGGTACACAGTGTGGTCATACGTAGCTGATTCTTCGATGATGACTGTTT- 331
BSNT_01538___ 320 CCATCCTTACCGGTCTGTTTACTATTATCATCGCGGCCGGAATTGTCGCG 369
|.|||||.||||||||.||||||||.||.||.||.|||||.|||
RBAM_009360__ 332 ------TGACCGGGCTGTTTACGATTATCATTGCCGCAGGCATTGTGGCG 375
BSNT_01538___ 370 AACGAATTTAATTGGGGAACGATTAAGCTATTAATG--ATTCGGCCGCTC 417
||.||.||.||.|||||.|||||.|||||..| || ||.||.||||||
RBAM_009360__ 376 AATGAGTTCAACTGGGGCACGATCAAGCTGCT--TGCCATCCGTCCGCTC 423
BSNT_01538___ 418 AGTCGTTTTCAAATTTTGATGTCCAAATATATTACAGTTCTCCTGTTTGG 467
||.||||||||.||||||.|.||.||||||||.||.||.||.|||||.||
RBAM_009360__ 424 AGCCGTTTTCAGATTTTGCTATCTAAATATATGACGGTGCTGCTGTTCGG 473
BSNT_01538___ 468 GCTCCTGTTGCTGTTGATTTTATTTATCGGTTCTACTTTATTAGGGTTGA 517
.||.|||.||||..|||||||||||..|||.||..||.|.||.||.|||.
RBAM_009360__ 474 ACTGCTGATGCTTGTGATTTTATTTGCCGGCTCCGCTCTGTTGGGATTGG 523
BSNT_01538___ 518 TCTTCTTCGGAACGGGTGGTGAAACCGCCGCGAATATTCATTTAATCTAT 567
||||.|||||.||.||.||.||.||.||.||..||.|||||.|..|.||.
RBAM_009360__ 524 TCTTTTTCGGTACAGGGGGAGATACTGCGGCTGATGTTCATCTCGTATAC 573
BSNT_01538___ 568 AAGGATGGCCATGTCATTGAGCAAAACATGATGGGGCATT--TGGCCACA 615
||.||.|||||.||..||||||||||.||.|| .||.|| |.||.|.|
RBAM_009360__ 574 AAAGACGGCCAGGTTTTTGAGCAAAATATCAT--CGCCTTCCTCGCTAAA 621
BSNT_01538___ 616 ACGTATCTTTCTGAATCCGTCTCGGCTTTAATGGTGGCGACGATGGCGTT 665
||.|||.|.|.||||||.|||||.|||||.|||.|.||||||||||||||
RBAM_009360__ 622 ACATATGTCTATGAATCTGTCTCCGCTTTTATGCTTGCGACGATGGCGTT 671
BSNT_01538___ 666 TATGCTGTCTGCGGTATTCAGAAACAGCTCTCTTGCGGTTGGTTTTTCCA 715
|||||||||||||||||||.|.||||||||..|.|||||.||.|||||.|
RBAM_009360__ 672 TATGCTGTCTGCGGTATTCCGGAACAGCTCATTAGCGGTCGGATTTTCTA 721
BSNT_01538___ 716 TCTTCTTGTTGGTTGCCGGTACGATTGCAACTGCATTTATTGCAGCGAAA 765
|.||..|.||||||...||.|..|..||.||||.||||.||||..|||||
RBAM_009360__ 722 TTTTTCTATTGGTTATGGGAAACACGGCGACTGTATTTCTTGCCACGAAA 771
BSNT_01538___ 766 TTTGACTGGGCAAAGTATATATTGTTTGCTAATGTCGACTTGACTCAGTA 815
|||||.|||.|.||.|||||.||.||.||.|||...||.|||.||||.||
RBAM_009360__ 772 TTTGAATGGACCAAATATATTTTATTCGCCAATACGGATTTGTCTCAATA 821
BSNT_01538___ 816 TGTGGATGGCACACCGTTAATAAAAGGGATGACTATGACGTTTTCTCTCG 865
|.||.|.||.||.||.|||.||.|.||||||||.|||||.|||||..|.|
RBAM_009360__ 822 TATGAACGGGACTCCTTTAGTAGAGGGGATGACGATGACATTTTCGGTTG 871
BSNT_01538___ 866 TCATGCTGGCGATCTACTTTATCATCTTCCTGTTGCTTGCTTTCGGAATC 915
|.|||||.|.|||.|||||..|.||.||.|||..|||.||.|||||..||
RBAM_009360__ 872 TGATGCTTGTGATTTACTTCGTTATTTTTCTGGCGCTCGCATTCGGCGTC 921
BSNT_01538___ 916 TTCATGAAGCGGGATATTGCAAACTAA 942
|||.|.||.||.||||||||.|.||.|
RBAM_009360__ 922 TTCTTAAAACGCGATATTGCCACCTGA 948
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.