Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01337 and RBAM_008240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01337___yfjP.1.9828.seq
# -bsequence dna-align/RBAM_008240___yfjP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01337___yfjP-RBAM_008240___yfjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01337___yfjP-RBAM_008240___yfjP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01337___yfjP
# 2: RBAM_008240___yfjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity: 646/883 (73.2%)
# Similarity: 646/883 (73.2%)
# Gaps: 38/883 ( 4.3%)
# Score: 2329.5
#
#
#=======================================
BSNT_01337___ 1 ATGTGGAAGGAAAAAGTATCTGTCACGCCTCCGTATCATTTTGACCGCGT 50
|||||||||||||..||.||.|||||.||.||||||||||||||....||
RBAM_008240__ 1 ATGTGGAAGGAAACGGTTTCGGTCACACCGCCGTATCATTTTGATAAAGT 50
BSNT_01337___ 51 GCTGGACAGGCTGTCTTTAGACCCCCTCAATGCTGTTGATCGAGAGGCAA 100
.||.||.||||||||..|.||.||.||.|||||.||.||||...|.||||
RBAM_008240__ 51 CCTTGAAAGGCTGTCGCTCGATCCGCTGAATGCGGTCGATCTTCATGCAA 100
BSNT_01337___ 101 GGGAAGTCCGTGTGCCAATCAGAAATCAAGCGGGGGACGTATGTATTGTA 150
|...|.||...|||||..|||||| |..|||||| |.|
RBAM_008240__ 101 GATCAATCAAAGTGCCGCTCAGAA------CACGGGACG--------GCA 136
BSNT_01337___ 151 AA--------------GGTACAAGCGTTAGG-ACATGCGGGC-GATCCTG 184
|| |||.||||||..||| ||.|.| || ||.||.|
RBAM_008240__ 137 AACTGTCCGTCATCACGGTTCAAGCGGAAGGCACCTCC--GCAGACCCGG 184
BSNT_01337___ 185 AGTTCCTCGTCAGCGGGGAAACGGATCAGGGAGAAATGATGAAGGAA--- 231
..||.|||||||||||.|||||||| |.|.|||.| |||||..|||
RBAM_008240__ 185 TCTTTCTCGTCAGCGGAGAAACGGA-CCGCGAGGA--GATGATTGAACGG 231
BSNT_01337___ 232 ATCAAGCGGATTTTTCAATGGGAAAATCATTTGCAGCACGTTCTGGATCA 281
|||||.|..||||||||.|||||..|.|...|.||||..||.||.|||||
RBAM_008240__ 232 ATCAAACACATTTTTCAGTGGGAGCAGCCGCTTCAGCCTGTGCTTGATCA 281
BSNT_01337___ 282 TTTTTCAAAAACGAGCCTGTCCGCTATTTTTGAAGAGCATGCCGGGACGC 331
|||.||||||||.|..|||||.|.|.|||||||.||||||||.||.||.|
RBAM_008240__ 282 TTTCTCAAAAACAAATCTGTCGGGTCTTTTTGAGGAGCATGCGGGAACCC 331
BSNT_01337___ 332 CGCTTGTTCTGGACTACAGCGTGTACAACTGCATGATGAAATGCATTATC 381
||||.||..||||.||...|||.||||||||..|.|||||||||||.|||
RBAM_008240__ 332 CGCTCGTCTTGGAGTATGACGTCTACAACTGTCTCATGAAATGCATCATC 381
BSNT_01337___ 382 CACCAGCAGCTCAATCTTTCCTTCGCTTACACGCTAACAGAACGGTTTGT 431
||||||||||||||.||.||||||||||..||..||||.||||||||.||
RBAM_008240__ 382 CACCAGCAGCTCAACCTGTCCTTCGCTTTTACTTTAACGGAACGGTTCGT 431
BSNT_01337___ 432 TCATGCGTTTGGCGAGCAGAAGGATGGCGTGTGGTGCTACCCAAAGCCGG 481
.|||||.||.||.||.||.||.||.|||||.||||||||.||..|||||.
RBAM_008240__ 432 CCATGCCTTCGGTGAACAAAAAGACGGCGTCTGGTGCTATCCCGAGCCGA 481
BSNT_01337___ 482 AAACGATTGCAGAACTCGATTATCAGGATCTGCGTGATCTGCAATTCAGC 531
|||||||..|.|..||.||.||||||||..||||.||.||.||.||||||
RBAM_008240__ 482 AAACGATCACGGGGCTTGAGTATCAGGACTTGCGGGAGCTCCAGTTCAGC 531
BSNT_01337___ 532 ATGAGAAAAGCGGAATACACCATTGATACATCAAGGATGATCGCAGAAGG 581
|||||||||||||||||..|.|||||.|..|||.|||||||.||||||||
RBAM_008240__ 532 ATGAGAAAAGCGGAATATGCGATTGACATTTCACGGATGATTGCAGAAGG 581
BSNT_01337___ 582 CACACTCAGCTTGTCAGAGCTGCCGCATATGGCGGATGAAGACATTATGA 631
..|.||||...||.|.||.||..|.|||.||.||||||||||||||||||
RBAM_008240__ 582 AGCGCTCAATCTGGCGGAACTTACCCATTTGTCGGATGAAGACATTATGA 631
BSNT_01337___ 632 AGAAACTGATCAAAATTAGGGGTATCGGCCCGTGGACCGTGCAAAATATC 681
|.||.|||||||..||.||.||.|||||||||||||||||.|||||..||
RBAM_008240__ 632 AAAAGCTGATCACCATCAGAGGCATCGGCCCGTGGACCGTCCAAAACGTC 681
BSNT_01337___ 682 CTCATGTTCGGACTTGGCCGTCCCAATTTATTCCCGCTTGCCGATATCGG 731
|||||||||||.||.|||||.||.|||.|.||.||..|.||.||.|||||
RBAM_008240__ 682 CTCATGTTCGGCCTCGGCCGCCCGAATCTGTTTCCTTTGGCGGACATCGG 731
BSNT_01337___ 732 CCTCCAGAATGCCATCAAACGCCATTTTCAGCTGGACGATAAGCCGGCAA 781
|||.||.||||||.|||||||||..||....||.||.|||||.|||.|||
RBAM_008240__ 732 CCTGCAAAATGCCGTCAAACGCCGCTTCGCCCTTGAGGATAAACCGTCAA 781
BSNT_01337___ 782 AGGATGTCATGCTGGCGATGAGCAAGGAGTGGGAGCCTTATTTAAGCTAT 831
|.||.||.|||||...|.|.||||..||.||||.|||.||||||||||||
RBAM_008240__ 782 AAGACGTGATGCTCCAGGTAAGCAGCGAATGGGCGCCGTATTTAAGCTAT 831
BSNT_01337___ 832 GCGTCTTTGTATTTGTGGAGAAGTATAGAATAA 864
|||||.||.|||||||||||||||||.||||.|
RBAM_008240__ 832 GCGTCCTTATATTTGTGGAGAAGTATTGAATGA 864
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