Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03873 and RBAM_005610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_03873___trkA.1.9828.seq
# -bsequence dna-align/RBAM_005610___trkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03873___trkA-RBAM_005610___trkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03873___trkA-RBAM_005610___trkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03873___trkA
# 2: RBAM_005610___trkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 924/1039 (88.9%)
# Similarity: 924/1039 (88.9%)
# Gaps: 2/1039 ( 0.2%)
# Score: 4148.0
#
#
#=======================================
BSNT_03873___ 1 GTGTACGACACTATCGTAATCGGGGCTGGTCAAGCAGGGATCTCGATAGG 50
.||||||||||.||.||||||||.||.|||||.|||||.|||||..||||
RBAM_005610__ 1 ATGTACGACACGATAGTAATCGGAGCCGGTCAGGCAGGAATCTCAGTAGG 50
BSNT_03873___ 51 ATATTATTTTAAGCAGTCCGATCAAAAGTTTATCATTTTGGATAAAAGTC 100
|||||||.|.|||.||||..|.||||||||||||||||||||||||||||
RBAM_005610__ 51 ATATTATCTAAAGAAGTCGAAACAAAAGTTTATCATTTTGGATAAAAGTC 100
BSNT_03873___ 101 ATGAGGTGGGGGAGAGCTGGAAAGATCGGTATGACTCATTGGTTTTATTT 150
||||.||.||.||.|||||||||.|.||||||||||||||||||||||||
RBAM_005610__ 101 ATGAAGTAGGAGAAAGCTGGAAAAACCGGTATGACTCATTGGTTTTATTT 150
BSNT_03873___ 151 ACTTCTCGAATGTATAGCTCTTTGCCTGGAATGCATCTTGAAGGAGACAA 200
||||||||||||||.||||||||||||||||||||.||||||||||||||
RBAM_005610__ 151 ACTTCTCGAATGTACAGCTCTTTGCCTGGAATGCAGCTTGAAGGAGACAA 200
BSNT_03873___ 201 ACATGGATTTCCTACAAAAAATGAAATTGTTGCTTATCTAAAGAAATATG 250
.||||||.|.|||.|||||||||||||||.|||||||||.||.|||||||
RBAM_005610__ 201 GCATGGACTCCCTTCAAAAAATGAAATTGCTGCTTATCTGAAAAAATATG 250
BSNT_03873___ 251 TTGAAAAATTTGAAATTCCAATCCAATTACGGACAGAAGTAATAAGTGTC 300
||||||.|||||||||.||.||||||||||||||||||||||||||||||
RBAM_005610__ 251 TTGAAAGATTTGAAATCCCGATCCAATTACGGACAGAAGTAATAAGTGTC 300
BSNT_03873___ 301 CTAAAAATAAAGAATTATTTCTTAATAAAAACAAATCGGGAAGAATATCA 350
|.||||.|||||||.||||||||||||||||||||.||||||||||||||
RBAM_005610__ 301 CAAAAATTAAAGAACTATTTCTTAATAAAAACAAACCGGGAAGAATATCA 350
BSNT_03873___ 351 AACGAAGAATCTTGTCATTGCTACAGGGCCTTTTCATACCCCTAATATTC 400
|||||||||||||||.||.||..||||.|||||||||||||||||.||||
RBAM_005610__ 351 AACGAAGAATCTTGTGATGGCCGCAGGTCCTTTTCATACCCCTAACATTC 400
BSNT_03873___ 401 CATCAATATCAAAGGATTTATTCGATAATATTAATCAACTACACTCATCA 450
||||||||||||.||||.||..||||.|||||.|||||.||||.||.|||
RBAM_005610__ 401 CATCAATATCAAGGGATGTAGCCGATCATATTCATCAATTACATTCTTCA 450
BSNT_03873___ 451 CAATATAAGAATTCAAAACAATTGGCATATGGAAATGTACTAGTAGTTGG 500
||||||||..|||||||||||.||||...|||.||||||||.|||||.||
RBAM_005610__ 451 CAATATAAACATTCAAAACAACTGGCGCCTGGGAATGTACTGGTAGTCGG 500
BSNT_03873___ 501 TGGTGGGAATAGTGGTGCTCAGATAGCTGTTGAATTATCCAAAGAAAGAG 550
.||.||||||||.||.||||||||||||||||||||||||||||||||||
RBAM_005610__ 501 CGGCGGGAATAGCGGGGCTCAGATAGCTGTTGAATTATCCAAAGAAAGAG 550
BSNT_03873___ 551 TTACATATTTAGCCTGTAGTAATAAACTAGTTTATTTCCCTTTAATGATC 600
||||||||||.||.||.||||||||||..|||||||||||||||..|||.
RBAM_005610__ 551 TTACATATTTGGCTTGCAGTAATAAACCGGTTTATTTCCCTTTATGGATT 600
BSNT_03873___ 601 GGAAAAAGAAGCATCTTTTGGTGGTTTGATAAATTAGGAGTTTTACATGC 650
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_005610__ 601 GGAAAAAGAAGCATCTTTTGGTGGTTTGATAAATTAGGAGTTTTACATGC 650
BSNT_03873___ 651 AAGTCATACATCAATAGTAGGCAAATTCATTCAAAAGAAAGGTGATCCAG 700
||||||||||||||||.|||||||.||||||||.||||||||.||.||..
RBAM_005610__ 651 AAGTCATACATCAATATTAGGCAAGTTCATTCAGAAGAAAGGCGACCCCA 700
BSNT_03873___ 701 TATTTGGGCATGAATTAAAACATGCAATAAAACAGAAGGAGATCATCTTA 750
||||||||.|||||||||||||||||||||.|||||||.|||||||||||
RBAM_005610__ 701 TATTTGGGTATGAATTAAAACATGCAATAAGACAGAAGAAGATCATCTTA 750
BSNT_03873___ 751 AAAAAAAGAGTCATTGCCGCAAAGCAAAATGAAATCATTTTTAAAGATTC 800
|||.||||||||||.||||.|||||||||||||||.||||||||||||||
RBAM_005610__ 751 AAACAAAGAGTCATAGCCGGAAAGCAAAATGAAATGATTTTTAAAGATTC 800
BSNT_03873___ 801 ATCTACATTAGAAGTAAACAATATTATTTGGGCTACTGGTTTCAGGAATC 850
||||.|||||||||||||||||||.||||||||.||||||||.|.|||||
RBAM_005610__ 801 ATCTTCATTAGAAGTAAACAATATCATTTGGGCAACTGGTTTTAAGAATC 850
BSNT_03873___ 851 C-CTTATGTTGGATAAATATAAAAGGTGTTTTGGATCAAGAAGGTCGAAT 899
| ||| ||||||||.||.|||.||||||||||||||.|.|||||.|||||
RBAM_005610__ 851 CGCTT-TGTTGGATGAAAATAGAAGGTGTTTTGGATAAGGAAGGCCGAAT 899
BSNT_03873___ 900 CATACATCATAGAGGTGTTTCACCTGTAGAAGGATTGTACTTTATAGGGT 949
.||||||||..|.|||||||||.||||.|||||||||||.|||||.||.|
RBAM_005610__ 900 TATACATCACCGGGGTGTTTCAGCTGTGGAAGGATTGTATTTTATTGGTT 949
BSNT_03873___ 950 TGCCTTGGCAGCATAAGCGAGGTTCAGCATTGCTTCAAGGCGTAGGAAAT 999
|||||||||||||||.||||||||||||..||||||||||.|||||||||
RBAM_005610__ 950 TGCCTTGGCAGCATAGGCGAGGTTCAGCGCTGCTTCAAGGTGTAGGAAAT 999
BSNT_03873___ 1000 GATGCTGAATACATTGTAAAACAAATGAACGGTGAATAA 1038
||||||||||||||||||||||||||||||||||.|||.
RBAM_005610__ 1000 GATGCTGAATACATTGTAAAACAAATGAACGGTGGATAG 1038
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