Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05404 and BSU40620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_05404.1.22522.seq
# -bsequence dna-align/BSU40620___yybJ.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05404-BSU40620___yybJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05404-BSU40620___yybJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05404
# 2: BSU40620___yybJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 740
# Identity: 433/740 (58.5%)
# Similarity: 433/740 (58.5%)
# Gaps: 163/740 (22.0%)
# Score: 1046.0
#
#
#=======================================
BSNT_05404 1 ATGTCAAAAAGTGCAT-ATTTAAAAGTAGAACACCTTACAAAAAAAATTA 49
|| ||| .|.|||..|.||||.|||||||||||||
BSU40620___yy 1 --------------ATGATT--GAGGTATTAAACCTAACAAAAAAAATTA 34
BSNT_05404 50 GAAAGCA----AGTTCTA-ATAGACGATATCAGTT-TACAGTTAGATCGA 93
.|||| | ||||.|| ||| |||||..|| |||| ||.||...|
BSU40620___yy 35 AAAAG-ACTACAGTTTTAGATA----ATATCTCTTATACA-TTTGAAAAA 78
BSNT_05404 94 GGGAAAATTTATGG---ATTTACAGGAAAAAATGGATCAGGAAAAACAAT 140
||.|.||||||||| |||| ||.|..|||||.||.|||||.||.||
BSU40620___yy 79 GGAACAATTTATGGACTATTT---GGGAGTAATGGTTCTGGAAAGACCAT 125
BSNT_05404 141 GCTATTTAAGGCAATATGTGGTCTTATTAAACCGTC-------AAGCGGA 183
||||.||...|||.|||..|| .|||.|| ||| ||| |||
BSU40620___yy 126 GCTACTTCGTGCATTATCCGG-GTTAATA----GTCCCTACTGAAG-GGA 169
BSNT_05404 184 TTTATTGAA--ATTAACGG---AAAAAAACTTGGAGGGAAAATCTCTTTC 228
.||| || |||||.|| |.||..||.|..|| |.||||||||.
BSU40620___yy 170 -GTAT--AACTATTAAAGGTGAACAATTACATAAAG---ATATCTCTTTT 213
BSNT_05404 229 CCAGAGAGCGTTGGAGCTATAATAG--AATATCCAGGATTTTTACCTAAC 276
||..|.||.||.|||...||.|||| |||||.||| ||..|.|||.|.
BSU40620___yy 214 CCTAAAAGTGTAGGATTAATTATAGAAAATATGCAG--TTACTTCCTCAG 261
BSNT_05404 277 TATACAGGGTTTAAAAACCTTAAGATGATAGCAGATA-TAAAAGGAATAC 325
|||...|..||||..||||||||.||..|..||.|.| |||||.||
BSU40620___yy 262 TATGATGCTTTTACTAACCTTAAAATTTTGTCAAAAATTAAAAAGA---- 307
BSNT_05404 326 TCACTGAGGATCAAATAAAAAACACAATAGAATC---------CGTCGGT 366
|| |.||||.|| ||..|.|.|.||||.|| .||.|||
BSU40620___yy 308 TC-----GCATCAGAT-AATGATATATTAGATTCTATTAGTAGAGTTGGT 351
BSNT_05404 367 TT--AAACCCTGATGATAAAAGAAAATTTAAAGATT-----ATTCT--TT 407
|| ||| ||..|||.|| |.|||||.|| ||||| ||
BSU40620___yy 352 TTGGAAA-----ATTTTAATAG----TGTAAAGGTTAGTAAATTCTCGTT 392
BSNT_05404 408 AGGTATGAAACAAAGACTTGGA-ATTGCCCAGGCAATTATGGAAGATCCA 456
|||.|||||||||.|| ||..| |||||.|||||.|||.|.|||.|.||.
BSU40620___yy 393 AGGAATGAAACAACGA-TTAAATATTGCACAGGCTATTTTTGAAAAACCT 441
BSNT_05404 457 GAACTAAT--TATTTTAGATGAACCTACCAATGCTCTTGATAAAGATGGA 504
||..||.| ||.|| ||||||||.||.|||||..|||||.||.|.|||
BSU40620___yy 442 GATATATTGCTACTT--GATGAACCAACAAATGCGATTGATGAAAAAGGA 489
BSNT_05404 505 ATATCACTTGT--AAAAAATTTATTAATAGAACTAAAAGAGAAAAATA-- 550
.|..||.|||| |..|.|||..|| ||.||||||||||.|
BSU40620___yy 490 GTTGCATTTGTTCATGACATTCTTT--------TACAAGAGAAAAAAAGG 531
BSNT_05404 551 --AGTTA--ATCCTTCTTGCTAGCCAT------GAATCAGAAAGTTTAGA 590
||.|| ||..||.||.||||.||| || |||.|.|.||
BSU40620___yy 532 GGAGCTACCATTATTATTACTAGTCATCACAAGGA---AGATATTATA-- 576
BSNT_05404 591 GTTTCTTTCAGATGAAATTTTCATGGTAGA---GAA--AGGGACAATTAT 635
||||| |..|||.| ||.||| |||| ||| |.||||...||.
BSU40620___yy 577 ---TCTTT-ATGTGACA-TTGCAT--TAGAAATGAATCATGGACGTCTAG 619
BSNT_05404 636 CAA--TCATACAATACTAAAATCATGA------------- 660
.|| |||.| ||.|.|||.|| ||.|
BSU40620___yy 620 AAACTTCAGA-AAAAGTAATAT-ATAAGAAAGATAGTTAG 657
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