Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06292 and BPUM_3736
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_06292___rnpA.1.24716.seq
# -bsequence dna-align/BPUM_3736___rnpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06292___rnpA-BPUM_3736___rnpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06292___rnpA-BPUM_3736___rnpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06292___rnpA
# 2: BPUM_3736___rnpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 377
# Identity: 258/377 (68.4%)
# Similarity: 258/377 (68.4%)
# Gaps: 43/377 (11.4%)
# Score: 853.5
#
#
#=======================================
BSNT_06292___ 1 TTGAAGAAGCGAAATCGTTTAAAGAAAAATGAAGATTTTCAAAAAGTGTT 50
.|||||||||||||..|..||||.|||||||||||.||||||||||||||
BPUM_3736___r 1 ATGAAGAAGCGAAACAGGCTAAAAAAAAATGAAGAGTTTCAAAAAGTGTT 50
BSNT_06292___ 51 TAAACATGGGACATCAGTTGCAAACCGCCAGTTTGTCTTATATAC--GCT 98
||||.|.||...||||.|.||.||.||.||.||.| ||||.||| |||
BPUM_3736___r 51 TAAAAAAGGTCAATCAATGGCGAATCGTCAATTCG--TTATTTACCAGCT 98
BSNT_06292___ 99 TGATCAGCCTGAAAAT---GATGAACTGCGTGTCGGGCTTTCCGTCAGCA 145
.|||||.|| |||| ||||||||||||.|.||..|.||.||.||.|
BPUM_3736___r 99 GGATCAACC---AAATCAAGATGAACTGCGTTTAGGATTGTCTGTGAGTA 145
BSNT_06292___ 146 AAAAAATTGGCAATGCTGTGATGCGAAATCGGATCAAACGTTTGATTCGG 195
|.||.|||||.|||||.||||||.|||||||.||.|||||..||||.||.
BPUM_3736___r 146 AGAAGATTGGTAATGCAGTGATGAGAAATCGAATTAAACGACTGATCCGT 195
BSNT_06292___ 196 CAGGCCTTTCTTGAAGAGAAAG------AGAGACTGAAGGAAAAGGATTA 239
||||..|||.| ||||.||| ||..|..|.|.|||||.||.||
BPUM_3736___r 196 CAGGTGTTTTT---AGAGGAAGGTCATAAGTTAAAGCAAGAAAAAGACTA 242
BSNT_06292___ 240 CATCATTATTGCCAGAAAACCGGCGAGCCAGCTGACATTTGAGGAAACGA 289
|||..|.|||||.||||||||.||.||..|..||||.|||||.|||||
BPUM_3736___r 243 CATTGTCATTGCGAGAAAACCAGCAAGTGAATTGACCTTTGAAGAAAC-- 290
BSNT_06292___ 290 AAAAAAG--TTTGCAGCATCTATTCAGAAAGTC-----TTCATTATATAA 332
|||.||| |.|.||.|||.||||.|||||.|| ||.||.| |.||
BPUM_3736___r 291 AAAGAAGTCTCTCCAACATTTATTTAGAAAATCCGCTGTTTATCA-ACAA 339
BSNT_06292___ 333 -----GAAA---TCTTCGTCAAAGTAG 351
|||| |||||||.|
BPUM_3736___r 340 CAACCGAAAAAGTCTTCGTAA------ 360
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