Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01410 and BPUM_3666
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_01410___yfhB.1.24716.seq
# -bsequence dna-align/BPUM_3666.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01410___yfhB-BPUM_3666.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01410___yfhB-BPUM_3666.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01410___yfhB
# 2: BPUM_3666
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1105
# Identity: 522/1105 (47.2%)
# Similarity: 522/1105 (47.2%)
# Gaps: 431/1105 (39.0%)
# Score: 960.0
#
#
#=======================================
BSNT_01410___ 1 ATGAAAGA-AGCAGAG-GTATTAAAATAT-GAAGCATTTACAAGCAGTCC 47
||||.||| |..||.| |||| .||.| ||.||.||||||| |
BPUM_3666 1 ATGAGAGACATTAGGGTGTAT---CATGTCGATGCGTTTACAA------C 41
BSNT_01410___ 48 CGGCAA------AGGAAACCCCGCAGGCGTCGTTTTGCAGGGAGA-CGAT 90
.|..|| ||||||..|.||.||.|||||.|||.|.||.|| |..|
BPUM_3666 42 TGAGAAATTTGGAGGAAATGCTGCTGGGGTCGTGTTGGATGGTGATCTTT 91
BSNT_01410___ 91 TATACGGAAGACGAGATGCAGATCAT--------AGCTGAACGTGCCGG- 131
|| |||||.||.||||||||||..|| ||.|||||.|.||.|
BPUM_3666 92 TA-ACGGAGGATGAGATGCAGAATATCGCCAAAGAGTTGAACTTACCTGA 140
BSNT_01410___ 132 ----GTATTCAGAAACCT-----CCT-----TTATCCGAAA-AAGC-GAG 165
||.|| || ||| |.|| ||| |||| ||.
BPUM_3666 141 ATCTGTCTT-------CTTGCTGCCTGCACATGAT---AAAGAAGCTGAT 180
BSNT_01410___ 166 TCGGCCGATCTTGAACTCCGTTACTTTACCCCTGGAC--ACGAAATGAAT 213
| |||..| ||...|||||.||.|| ||| |.||..|.|||
BPUM_3666 181 T------ATCGGG---TCAAATACTTCACACC--GACAGAGGAGGTCAAT 219
BSNT_01410___ 214 TTGTGCGGTCATGCGACAGTTG------CTTCTCTTT-----ACGCATTA 252
||.|||||.|||||.||.|||| |||..|||| |||
BPUM_3666 220 TTCTGCGGGCATGCAACTGTTGGATTGACTTGGCTTTTAGCGACG----- 264
BSNT_01410___ 253 TGTGAGAAAGGAATGCTGG----AGAGCGGTAAAACGTACAGCATCCAAA 298
|||...|| ||||| |||| |||||
BPUM_3666 265 ---GAGCTTGG---GCTGGCAAAAGAG----AAAAC-------------- 290
BSNT_01410___ 299 CGAAAGCGGGTATCCTGCCTGTGAAGATTTCTGAAA--AAGA-TGGCCGC 345
|| |||| |.|||.| |||| |||| |||||..
BPUM_3666 291 ----AG-GGGT------CGTGTTA--------GAAACGAAGATTGGCCAT 321
BSNT_01410___ 346 ATTC-------ATATCACGCTTGAACAGGCCTCTCCGCAATTCAAACCAT 388
.||| ||..|||| ..|||.|.| ||| ||..|||
BPUM_3666 322 GTTCCTGTTGTATGGCACG-AAGAAAATG-------GCA----AAGTCAT 359
BSNT_01410___ 389 TTACAGGCGAT-CGGAAAAAACTTGCGGACGCACTGGGTATCACCGATGA 437
|||| .||||| .|||||| .||..|.||||..|
BPUM_3666 360 -------CGATGTGGAAA--------TGACGCA---AGTGACGCCGAAAA 391
BSNT_01410___ 438 ----AGATTTTCAT----------GAAGACCTTCCGATTG---TGTTTGG 470
||||||| || |||||.||| |.|| ||.||||
BPUM_3666 392 CGCGAGATTTT-ATGATCGATTTAGAAGAGCTT---AGTGACATGATTGG 437
BSNT_01410___ 471 ---CAGCACTGGGAT---ATGGACAGCCATCGTTCCGCTTAAATCATTGG 514
||||| |.||| ||.| |.||||| ||.|.|| |||
BPUM_3666 438 TGTCAGCA--GTGATCGCATTG--ATCCATC-TTACCCT---ATC----- 474
BSNT_01410___ 515 AGGCTTCCAAAAAAATGGTGCCAGATAACAAACAATTTCCGGAA------ 558
|||| ||.|||||| ||||||
BPUM_3666 475 ------------AAAT---------TAGCAAACA----CCGGAAACTGGC 499
BSNT_01410___ 559 ------GTGTT----------------AG----TTGATCTGCCAA----- 577
.|||| || |||| ||||
BPUM_3666 500 ATCTTCTTGTTCCGATGAAGCACCAACAGGACATTGA----CCAAGCGGC 545
BSNT_01410___ 578 ----AA-------GCTTCAG------------------------TC-CAT 591
|| ||||.|| || ||.
BPUM_3666 546 ACCGAACTTAGCGGCTTTAGGGAAAATGAATAAAGAGCAGAATATCACAA 595
BSNT_01410___ 592 CCGTTTACCTTTGAAACCGTCCATCCCG--ACAG----CGACC--TGCAC 633
|...|.|||||| |.||..|.|||.||| |.|| .||.| |.|||
BPUM_3666 596 CGACTCACCTTT-ATACATTTCATACCGCAAAAGAAGTTGATCTTTACAC 644
BSNT_01410___ 634 GGGCGCCACTTTTCATCCCCGTATTCGGGA-ACGATTGAAGACCCCGTGA 682
|.|.| |.|||.|| ||..|.||| |||| || ..|||||.||.||||
BPUM_3666 645 GAGGG--ATTTTGCA-CCTGGGATT-GGGATAC--CCGAAGATCCGGTGA 688
BSNT_01410___ 683 CCGGCACAGCATCCGGCGTGATGGGGGCTTATATGAAACATTATGGCAAT 732
|.||..|||||..|||.|...|||..|.|||| |.||||
BPUM_3666 689 CGGGGGCAGCAAACGGGGCATTGGCTGGTTAT------CTTTAT------ 726
BSNT_01410___ 733 GCCGAGCAGCATA-AATTTATCAT---TGAACAAG---------GGCAGG 769
||| |...|||||| |.|||||| |.|.|.
BPUM_3666 727 ----------ATAGAGGGTATCATTTCTCAACAAGAAACCACTCGTCTGA 766
BSNT_01410___ 770 AAATTGGAAAA---GATGGAAAAGTGGAGA-----------TCGAAAT-- 803
|.||||...|| ||||..|..| |.||| |||.|.|
BPUM_3666 767 ACATTGCTCAAGGGGATGCCATCG-GCAGACCCGGCATCCTTCGCATTAC 815
BSNT_01410___ 804 ---------GAACGAAGCCGGCGGCCATGTGAAA----GTGAACA---TG 837
||||||| |.||| ||||.|| ||
BPUM_3666 816 GGTTATTCCGAACGAA-------------TCAAAACCTGTGATCAAAGTG 852
BSNT_01410___ 838 ACAGGAACAGCCGTTTACTCAGAAACCCGTATTC--------TTAA--AT 877
.||||..||||.||| |.|..||||| ||.| |
BPUM_3666 853 GCAGGCGCAGCGGTT---------ATCACTATTCGCGGCGTGTTGACCA- 892
BSNT_01410___ 878 TCTAA 882
|.|||
BPUM_3666 893 TATAA 897
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