Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05898 and BPUM_3500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_05898___ywaA.1.24716.seq
# -bsequence dna-align/BPUM_3500___ywaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05898___ywaA-BPUM_3500___ywaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05898___ywaA-BPUM_3500___ywaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05898___ywaA
# 2: BPUM_3500___ywaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1122
# Identity: 812/1122 (72.4%)
# Similarity: 812/1122 (72.4%)
# Gaps: 60/1122 ( 5.3%)
# Score: 2802.0
#
#
#=======================================
BSNT_05898___ 1 ATGACTAAACAAACGATTCGCGTTGAATTGACATCAACAAAAAAACCGAA 50
|||.|.||||||.|.||.|||||||||.|.|..||||||||||||||.||
BPUM_3500___y 1 ATGCCAAAACAACCCATCCGCGTTGAACTTAGTTCAACAAAAAAACCAAA 50
BSNT_05898___ 51 ACCAGACCCAA----ATCAGCTTTCGTTCGGAAGAGTGTTTACAGACCAC 96
|| |.||| ||||.|||...|||||||.|.|.||.|||||.|||
BPUM_3500___y 51 AC----CTCAATCTGATCAACTTGAATTCGGAAAAATCTTCACAGATCAC 96
BSNT_05898___ 97 ATGTTTGTAATGGACTATGCGGCA--GATAAAGGTTGGTACGATCCAAGA 144
||||||||.|||||.|||.| || |||.||||.|||||.||.||||||
BPUM_3500___y 97 ATGTTTGTGATGGATTATTC--CATTGATCAAGGCTGGTATGACCCAAGA 144
BSNT_05898___ 145 ATCATTCCTTATCAGCCCTTAT--CAATGGATCCGGCCGCAATGGTCTAT 192
||.||.|||||||||.| ||| |||||||.||.||..|.||||||||.
BPUM_3500___y 145 ATTATCCCTTATCAGGC--TATTCCAATGGACCCAGCTTCGATGGTCTAC 192
BSNT_05898___ 193 CACTACGGCCAAACCGTGTTTGAAGGGTTAAAGGCTTACGTGTCAGAGGA 242
||.||.||.|||.|.||.||||||||.||.||||||||.||.||.|||||
BPUM_3500___y 193 CATTATGGGCAATCTGTTTTTGAAGGCTTGAAGGCTTATGTTTCCGAGGA 242
BSNT_05898___ 243 TGACCATGTTCTGCTT-TTCAGACCGGAAAAAAATATGGAACGCCTGAAT 291
|.|..|..|||| ||| |||.|.||||||||.||.|||||.|| ||.||.
BPUM_3500___y 243 TCAGAAAATTCT-CTTATTCCGTCCGGAAAAGAACATGGAGCG-CTTAAA 290
BSNT_05898___ 292 CA-ATCAAACGACCGCCTCTGCATCCCGCAAATTGATGAAGAACAGGTTC 340
|| |||.||.||||||||.||.|||||||||||||||..||||..||||.
BPUM_3500___y 291 CAGATCCAATGACCGCCTGTGTATCCCGCAAATTGATACAGAAACGGTTT 340
BSNT_05898___ 341 TTGAAGGCTTAAAGCAGCT--TGTCGCAATTGATAAAGACTGGATTCCAA 388
|.||.||||||||..|.|| | |||| ||||||||.||.|||.|.||..
BPUM_3500___y 341 TAGAGGGCTTAAATGAACTCAT-TCGC-ATTGATAAGGATTGGGTACCTG 388
BSNT_05898___ 389 ATGCGGAGGGCACGTCCCTTTACATCCGTCCGTTCATCATCGCAACCGAG 438
||||.||||||||.|||.|.||.||||||||.|||||.||..|.||.|||
BPUM_3500___y 389 ATGCAGAGGGCACTTCCTTGTATATCCGTCCATTCATTATTTCCACTGAG 438
BSNT_05898___ 439 CCTTTCCTTGGTGTTGCGGCATCTCATACGTATAAGCTCTTGATCATTCT 488
||.|...|.||.|||||..|.||....|||||||||||..||||.||.||
BPUM_3500___y 439 CCGTATTTAGGCGTTGCACCGTCAAGCACGTATAAGCTGCTGATTATCCT 488
BSNT_05898___ 489 TTCTCCGGTCGGCTCTTATTACAAAGAAGGCATTAAGCCGGTCAAAATCG 538
.|||||.||.||.|||||.||.|||||||||||..|.|||||||||||.|
BPUM_3500___y 489 ATCTCCAGTGGGATCTTACTATAAAGAAGGCATCCATCCGGTCAAAATTG 538
BSNT_05898___ 539 CTGTTGAAAGTGAATTTGTCCGTGCGGTAAAAGGCGGAACAGGAAATGCC 588
|.|||||||..||.|||||||||||.||.|||||||||||||||||||||
BPUM_3500___y 539 CCGTTGAAAACGAGTTTGTCCGTGCCGTTAAAGGCGGAACAGGAAATGCC 588
BSNT_05898___ 589 AAAACCGCAGGAAACTATGCTTCAAGCTTAAAAGCGCAGCAGGTCGCCGA 638
|||||.||.||||||||.||.||||||.|.||.||.|||||.||.||.||
BPUM_3500___y 589 AAAACAGCCGGAAACTACGCCTCAAGCCTTAAGGCACAGCAAGTGGCTGA 638
BSNT_05898___ 639 AGAGAAAGGATTTTCCCAAGTGCTCTGGCTGGACGGCATTGAGAAGAAAT 688
|...|||||.|||||.|||||.||.|||||.||.||..||||||||||.|
BPUM_3500___y 639 AACCAAAGGTTTTTCACAAGTTCTTTGGCTTGATGGTGTTGAGAAGAAGT 688
BSNT_05898___ 689 ACATCGAAGAAGTCGGAAGCATGAACATCTTCTTCAAAATCAACGGTGAA 738
|.||.||||||||||||||.|||||.||||||||.||.|||||.||.|||
BPUM_3500___y 689 ATATTGAAGAAGTCGGAAGTATGAATATCTTCTTTAAGATCAATGGGGAA 738
BSNT_05898___ 739 ATCGTAACACCGATG--CTGAACGGGAGCATCCTGGAAGGCATTACGCGC 786
|||||.||.|| || .|||||||.|||||..|.||||||||.||.||.
BPUM_3500___y 739 ATCGTGACGCC--TGAATTGAACGGCAGCATTTTAGAAGGCATCACCCGT 786
BSNT_05898___ 787 AATTCAGTCATCGCCTTG-----CTTAAGCATTGGGGCCTTCAAGTTTCA 831
||.||.|| .|||| .|.||.||||||||..|||.|||..||
BPUM_3500___y 787 AACTCTGT-----ACTTGAGCTATTAAAACATTGGGGAATTCCAGTGACA 831
BSNT_05898___ 832 GAACGAAAAATTGCGATCGATGAGGTCATCCAAGCCCATAAAGACGGCAT 881
||.||.|||||..||||.||||||.|.||..||||.|||.| ||
BPUM_3500___y 832 GAGCGTAAAATCTCGATTGATGAGTTAATTGAAGCACATCA-------AT 874
BSNT_05898___ 882 C-------CTGGAAGAAGCCTTCGGAACAGGTACAGCAGCTGTTATTTCC 924
| ||.||||||..|||.|||||.||.||.||.||.||.||.||.
BPUM_3500___y 875 CAGGTGAGCTTGAAGAAATCTTTGGAACTGGAACGGCGGCCGTCATCTCT 924
BSNT_05898___ 925 CCAGTCGGCGAGCTGATCTGGCAGGATGAAACACTTTCGA-TCAACAACG 973
||.|||||.||..|.||.|..||.|||.|..||..|..|| |||| .|.|
BPUM_3500___y 925 CCTGTCGGGGAATTAATTTATCACGATCAGCCATATGTGATTCAA-GATG 973
BSNT_05898___ 974 GTGAAACAGGAGAAATCGCAAAAAAACTATATGACACGATTACAGGCATT 1023
||.|||||||.|||.|..||||.|||.|.|||||..|.|||||.||.|||
BPUM_3500___y 974 GTCAAACAGGTGAAGTATCAAAGAAATTGTATGAAGCCATTACTGGTATT 1023
BSNT_05898___ 1024 CAAAAAGGCGCTGTCGCAGACGAATTCGGATGGACGACCGAAGTCGCAGC 1073
|||||||||.|.....||||....|||||.|||||....|||||||...|
BPUM_3500___y 1024 CAAAAAGGCACACAACCAGATATCTTCGGCTGGACAGTAGAAGTCGACTC 1073
BSNT_05898___ 1074 GCT-GACTGAAAGCAAG--TAA 1092
|.| |.| ||.|||| |||
BPUM_3500___y 1074 GGTCGTC---AAACAAGCTTAA 1092
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