Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05857 and BPUM_3484
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05857___thiM.1.24716.seq
# -bsequence dna-align/BPUM_3484___thiM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05857___thiM-BPUM_3484___thiM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05857___thiM-BPUM_3484___thiM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05857___thiM
# 2: BPUM_3484___thiM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 904
# Identity: 502/904 (55.5%)
# Similarity: 502/904 (55.5%)
# Gaps: 230/904 (25.4%)
# Score: 1355.5
#
#
#=======================================
BSNT_05857___ 0 -------------------------------------------------- 0
BPUM_3484___t 1 ATGAAAACAAGCATCGCATCTCATTTATTGGAGAAGGTTCGAGCGGAAAA 50
BSNT_05857___ 1 -------GTGCATAGCATAACCAA-CAATGTCGTAACGAATTTCACAGCA 42
||.||||..||.||||| ||| |||||.|||||.||.|||||.
BPUM_3484___t 51 TCCACTTGTTCATAATATCACCAATCAA-GTCGTGACGAACTTTACAGCG 99
BSNT_05857___ 43 AACGGCCTGCTCGCGCTCGGCGCATCGCCCGTTATGGCGTACGCAAAAGA 92
||.||.|||||.||..|.|||||.|||||.||.|||||..||||.|||||
BPUM_3484___t 100 AATGGTCTGCTTGCTTTAGGCGCTTCGCCGGTCATGGCAAACGCCAAAGA 149
BSNT_05857___ 93 AGAGGTCGCCGATATGGCGAAAATTGCGGGTGCACTCGTTTTAAATATCG 142
|||.||.||.||.||||||.||.|.||.|.|||.||.||..|||||||.|
BPUM_3484___t 150 AGAAGTGGCAGAAATGGCGCAATTAGCCGATGCGCTTGTGCTAAATATTG 199
BSNT_05857___ 143 GAACGCTGAGCAAGGAGTCAGTCGAAGCGATGATCATCGCGGGAAAATCA 192
|.||.||||.|||||||.|.||.||..|.|||||..|.||.|||.||||.
BPUM_3484___t 200 GCACACTGACCAAGGAGACGGTGGAGTCCATGATTCTGGCTGGACAATCT 249
BSNT_05857___ 193 GCTAATGAACATGGCGTTCCCGTCATTCTTGATCCTGTCGGTGCCGGAGC 242
||||||.||.|.||..|.||.||..|..|.|||||||||||.|..||.||
BPUM_3484___t 250 GCTAATAAAAAGGGGATACCTGTTCTATTAGATCCTGTCGGCGTTGGTGC 299
BSNT_05857___ 243 AACACCGTTCCGCACTGAA-----------------TCG-GCACGTG-AC 273
.|||.||||.|| ..|||| |.| |||.||| ||
BPUM_3484___t 300 GACAACGTTTCG-TTTGAAAGCGGCAAAACAGCTGTTAGAGCAAGTGAAC 348
BSNT_05857___ 274 ATCATTCGTGAGGTGCGCC-TTGCTGCAATCAGAGGAAATGCGGCGGAAA 322
||.| || ||| |||||||.||.||.||.||||
BPUM_3484___t 349 ATAA-------------CCGTTG------TCAGAGGGAACGCTGCAGAAA 379
BSNT_05857___ 323 TTGCCCA--TACCGTCGGCGTGACCGACTGGCTG---ATC-AAAGGTGTT 366
||||.|| ||| |.|..||| || |||||| .|| |||||.||.
BPUM_3484___t 380 TTGCTCATTTAC--TTGAAGTG---GA-TGGCTGGGAGTCAAAAGGCGTG 423
BSNT_05857___ 367 GATGCGGGTGAAGGCGG----AGGCGACATCATCCGGCTGGCTC------ 406
||||| |||.|||| .||.||..| ||| |||.|
BPUM_3484___t 424 GATGC----GAAAGCGGCCAACGGAGATGT-ATC-----GGCACTAGTCA 463
BSNT_05857___ 407 AGCAGGCGGC----ACAAAAGCTAAACACGGTCATTGCGATAACTGGTGA 452
|.||.||.|| ||| ||..|.|||||..|.|.|||.||.||.||
BPUM_3484___t 464 AACAAGCAGCGAAGACA----CTTCAGACGGTTGTGGTGATTACAGGGGA 509
BSNT_05857___ 453 AGTTGATGTCAT---------AGCCGACACGTCACATGTATACACCCTTC 493
|||.|||||..| ||..|||..|| |||.|| |||
BPUM_3484___t 510 AGTCGATGTAGTGTCAGATGGAGAGGACGTGT----TGTCTA-----TTC 550
BSNT_05857___ 494 ATAACGGCCACAAGCTGCTGACAAAAGTGACAGGCGCCGGTTGCCTGCTG 543
||||.||.||..|...|||.||.||.|||||.||..|.||.||..|.|||
BPUM_3484___t 551 ATAATGGACATGAATGGCTCACCAAGGTGACGGGAACAGGCTGTTTACTG 600
BSNT_05857___ 544 ACTTCCGTCGTCGGTGCGTTTTGCGCTGTGGAAGAAA---------ATCC 584
||.||.||..||||.||.|||||.||.|..|..|||| |..|
BPUM_3484___t 601 ACGTCTGTTATCGGGGCATTTTGTGCAGCAGGTGAAAGGCCGCTTCACGC 650
BSNT_05857___ 585 ATTGTTTGCTG--CTATTGTTGCCATTTCTTCTTATGGGGTCGCCGCT-- 630
||.|...|||| |||||||| ||||||.|||||.|||
BPUM_3484___t 651 ATCGGCAGCTGCTCTATTGTT-----------TTATGGTGTCGCAGCTGA 689
BSNT_05857___ 631 -----CAGCTTGCCGCAAAGCAG-ACGGCTGACC-------AAGGCCCTG 667
||||| ||| || ||| ||||.||.|
BPUM_3484___t 690 AAAGGCAGCT----------CAGTAC-----ACCCAGAATAAAGGGCCAG 724
BSNT_05857___ 668 GAAGCTTTCAGATTGAATTGCTGAACAA-GCTTTCAACTGTTACTGAACA 716
|.|..|||||.||.|||||||| ||| || |||.|.|| |||
BPUM_3484___t 725 GTACGTTTCAAATGGAATTGCT---CAATGC-----ACTCTCAC---ACA 763
BSNT_05857___ 717 AGACGTCCAAGAATG----GGCGACTATAGAAA----GGGTGACTGTCTC 758
..||...|||..||| |.|| |||..|||| ||..||.||||.|
BPUM_3484___t 764 CAACTGGCAATGATGTGTTGACG-CTAGGGAAAATAGGGAGGAATGTCAC 812
BSNT_05857___ 759 ATGA 762
||||
BPUM_3484___t 813 ATGA 816
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