Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05825 and BPUM_3455
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_05825___vpr.1.24716.seq
# -bsequence dna-align/BPUM_3455___vpr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05825___vpr-BPUM_3455___vpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05825___vpr-BPUM_3455___vpr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05825___vpr
# 2: BPUM_3455___vpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2588
# Identity: 1701/2588 (65.7%)
# Similarity: 1701/2588 (65.7%)
# Gaps: 328/2588 (12.7%)
# Score: 5193.0
#
#
#=======================================
BSNT_05825___ 1 TTGAAAAAGGGGATCATTCGCTTTCTGC--TTGTAAGTTTTG-TCT---- 43
.|||||||||..||| ||.|.||||.| ||.|| ||| |||
BPUM_3455___v 1 ATGAAAAAGGTTATC--TCTCGTTCTTCCGTTCTA----TTGTTCTCCAC 44
BSNT_05825___ 44 TATTTTTTGCGTTATCCACAGGTATTACGGGCGTC--CAGGCAGCTCCGG 91
|| ||||||..|||||||||....||||.| ||| |||||.|||.|.|
BPUM_3455___v 45 TA-TTTTTGTTTTATCCACATTCTTTACAG--GTCAACAGGCTGCTGCCG 91
BSNT_05825___ 92 CTTCTTC--AAAAACGTCGGCTGATCTGGAAAAAGCCGAGGTATTCGGTG 139
||.|.|| |.|||| .||..||.|||||||||||.||..|.|||||||
BPUM_3455___v 92 CTCCATCGAACAAAC--AGGTGGAACTGGAAAAAGCAGAAATCTTCGGTG 139
BSNT_05825___ 140 ATATCGACATGACGA--CAAGCAAAAAAACAACCGTTATAGTGGAATTAA 187
|.||| .|||.|.| |.||.|||.|.||.||.||.||.||.|||||||
BPUM_3455___v 140 AAATC--AATGTCAAATCTAGAAAACATACCACTGTCATTGTTGAATTAA 187
BSNT_05825___ 188 AAGAAAAATCCTTGGCAGAAGCGAAGGAAGCGGGAGAAAGC-CAATCGAA 236
|.||||||||.||.|..|||||.|||.|||..|| .||||| |||.| ||
BPUM_3455___v 188 AGGAAAAATCTTTAGTTGAAGCAAAGCAAGAAGG-CAAAGCTCAAAC-AA 235
BSNT_05825___ 237 AAG-CAAGCTGAAAACCGCTCGCACCAAAGCAAAAAATAAAGCAATCAAA 285
||| |...||.||||...||||.||.||||.|||||||.|||||.|||||
BPUM_3455___v 236 AAGCCTCCCTCAAAAAATCTCGAACAAAAGTAAAAAATGAAGCACTCAAA 285
BSNT_05825___ 286 GCGGTGAAAAACGGAAAAGTAAACCG-----------GGAATATGAGCAG 324
| |||..|| ||||.|| .||||||||..|.
BPUM_3455___v 286 G-------AAATTGA----TAAAGCGAGTGTTCGTCAAGAATATGAAAAA 324
BSNT_05825___ 325 GTATTCTCAGGCTTCTCTATGAAGCTTCCAGCTAATGAGATTCCAAAACT 374
||.|||||.||.|||||||||||.|||||.||.||.||.|||||.||.||
BPUM_3455___v 325 GTCTTCTCTGGTTTCTCTATGAAACTTCCTGCAAACGAAATTCCGAAGCT 374
BSNT_05825___ 375 TCTCGCGGTAAAAGACGTTAAGGCGGTGTACCCGAACGTCACATATAAAA 424
.|||||.||..|.|..||.||.||.||.||.|||.||||.||||||.|||
BPUM_3455___v 375 GCTCGCAGTTGACGGAGTCAAAGCCGTTTATCCGGACGTTACATATCAAA 424
BSNT_05825___ 425 CAGACAATATGAAG-GATAAAG--ACGTCACAATC----TCCGAA-GACG 466
||| |||||| ||.|||| |.| ||.|| |||.|| ||.|
BPUM_3455___v 425 CAG-----ATGAAGTGAAAAAGGAAAG---CATTCAGCTTCCAAATGAAG 466
BSNT_05825___ 467 CCGTATCTCCGCAAATGGATGACAGTGCGCCTTATATCGGAGCA--AACG 514
..||.||.||.|..||||||.|.||.||.||.|.||||||.||| ||
BPUM_3455___v 467 ATGTCTCCCCTCTTATGGATAAAAGCGCTCCGTTTATCGGTGCACCAA-- 514
BSNT_05825___ 515 ATGCATGGGATTTAGGCTACACAGGAAAAGGCATTAAGGTGGCGATTATT 564
|.||.||||||...||||||.|.||||||||..|.||.||.||..|.|||
BPUM_3455___v 515 AAGCTTGGGATGCCGGCTACTCTGGAAAAGGGGTAAAAGTCGCTGTCATT 564
BSNT_05825___ 565 GACACTGGGGTTGAATACAATCACCCAGATCTGAAGAAAAACTTTGGACA 614
||.|||||.|||||.||.|..|||||.|||.|.||...|||||||||...
BPUM_3455___v 565 GATACTGGAGTTGACTATACCCACCCTGATTTAAAAGGAAACTTTGGTTT 614
BSNT_05825___ 615 ATATAAAGGATACGATTTTGTGGACAATGATTACGATCCAAAAGAAACAC 664
|||.|||||.||.||||||||.||.||.|||||...|||..||||.||||
BPUM_3455___v 615 ATACAAAGGCTATGATTTTGTTGATAACGATTATTCTCCGCAAGAGACAC 664
BSNT_05825___ 665 CAACAGGCGATCCGAGGGGCGGAGCGACTGACCACGGCACACACGTAGCC 714
|.|.|||.||.||.||.||.|.|.||||.|||||||||||||||||.||.
BPUM_3455___v 665 CTAAAGGAGACCCTAGAGGTGAATCGACAGACCACGGCACACACGTTGCA 714
BSNT_05825___ 715 GGAACTGTGGCTGCAAACGGAACAATTAAAGGCGTAGCGCC--TGATGCC 762
||.||..|.|||||.||.|||..|||.|||||.|| |||| .||||||
BPUM_3455___v 715 GGGACAATTGCTGCCAATGGACAAATGAAAGGTGT--CGCCAAGGATGCC 762
BSNT_05825___ 763 ACACTTCTTGCTTATCGTGTGTTAGGGCCTGGCGGAAGCGGCACATCGGA 812
|||||||||||.||.|||||..|.||.||.|||||....||.|||.|.||
BPUM_3455___v 763 ACACTTCTTGCATACCGTGTACTTGGACCAGGCGGTTCTGGAACAACTGA 812
BSNT_05825___ 813 AAACGTCATCGCCGGTGTGGAACGTGCAGTGCAGGACGGGGCAGATGTGA 862
||||||..|.||.||..|.||.|||||.||....||.||.||||||||.|
BPUM_3455___v 813 AAACGTTCTTGCAGGCATCGACCGTGCTGTTACTGATGGAGCAGATGTTA 862
BSNT_05825___ 863 TGAACCTGTCTCTCGGAAACTCTTTAAACAACCCGGACTGGGCGACAAGC 912
|||||||.||||||||||||..|.|.||.|||||.||.|..||.|||||.
BPUM_3455___v 863 TGAACCTCTCTCTCGGAAACAGTGTGAATAACCCTGATTATGCTACAAGT 912
BSNT_05825___ 913 ACAGCGCTTGACTGGGCCATGTCAGAAGGCGTTGTCGCTGTTACCTCAAA 962
|..||.|||||.|||||||||||.|||||||||||||||||.||.||.||
BPUM_3455___v 913 ATCGCACTTGATTGGGCCATGTCTGAAGGCGTTGTCGCTGTCACATCGAA 962
BSNT_05825___ 963 CGGCAACAGCGGACCGAACGGCTGGACAGTCGGATCGCCGGGCACATCCA 1012
.||.||||||||.||||||.||||||||||||||||.||.|||||.||.|
BPUM_3455___v 963 TGGAAACAGCGGTCCGAACAGCTGGACAGTCGGATCTCCCGGCACGTCAA 1012
BSNT_05825___ 1013 GAGAAGCGATTTCTGTCGGTGCGACTCAGCTGCCGCTCAATGAATAC-GC 1061
||||.||.||.||||||||.||.||||||||.|| .||| ||
BPUM_3455___v 1013 GAGATGCCATATCTGTCGGAGCAACTCAGCTTCC---------TTACAGC 1053
BSNT_05825___ 1062 C--------GTCACTTTCGGCTC----CTATTCTTCAGCAAAAGTGATGG 1099
| ||.||.||| | |||||||.|.|||||||||||||
BPUM_3455___v 1054 CTTTACAATGTGACATTC----CCGAACTATTCTACTGCAAAAGTGATGG 1099
BSNT_05825___ 1100 GCTATAACAAAGAGGACGACGTCAAAGCGCT----CAATAACAAAGAAGT 1145
||||..||.|||||...||..|.|||||.|| ||| |||.||||
BPUM_3455___v 1100 GCTACTACCAAGAGAGTGATTTAAAAGCACTTGACCAA----AAACAAGT 1145
BSNT_05825___ 1146 TGAGCTTGTCGAAGCGGGAATCGGCGAAGCAAAGGATTTTGAAGGGAAAG 1195
....||.|||.|.||.||.|||||.||.|.|||.|..|||||||..|..|
BPUM_3455___v 1146 CACACTCGTCCATGCAGGGATCGGTGACGAAAAAGCATTTGAAGACATTG 1195
BSNT_05825___ 1196 ACCTGACAGGCAAAGTCGCCGTTGTCAAACGAGGCAGC-ATTGCATTTGT 1244
|..|||.|||.||.||.|||||..||.|.||||| ||| |||||.|||||
BPUM_3455___v 1196 ATGTGAAAGGAAAGGTTGCCGTGATCGAGCGAGG-AGCGATTGCCTTTGT 1244
BSNT_05825___ 1245 GGATAAAGCGGATAACGCTAAAAAAGCCGGTGCCATCGGCATGGTTGTGT 1294
.|||||||..||.||.||.|||...||.|||||.||||||.|.||..|||
BPUM_3455___v 1245 TGATAAAGTCGACAATGCAAAAGCTGCTGGTGCAATCGGCGTTGTGATGT 1294
BSNT_05825___ 1295 ATAACAATCTCTCTGGAGAAATTGAAGCCAATGTGCCAGG-CATGTCTGT 1343
.||||||...|..|||.||||||..||.|.||||.||||| |.|| ||.|
BPUM_3455___v 1295 TTAACAACACCGATGGGGAAATTCCAGTCGATGTACCAGGTCTTG-CTCT 1343
BSNT_05825___ 1344 CCCAACGATTAAGCTTTCATTA---GAAG--ACGGCGAAAAACTCGTCAG 1388
.||||||||||||||.|||..| |||| |||||| ||.||||.
BPUM_3455___v 1344 TCCAACGATTAAGCTATCAAAAGCTGAAGGAACGGCG-----CTTGTCAA 1388
BSNT_05825___ 1389 CGCCCTGAAAGCTGGTGAGACA-AAAACAA----------CATTCAAGTT 1427
.|||.|..|.|||| ||.| ||.|||| |||||||.||
BPUM_3455___v 1389 TGCCATTGAGGCTG----GAAATAATACAACGACTTTCTCCATTCAATTT 1434
BSNT_05825___ 1428 GACGGTCTCAAAAGCGCTCGGTGAACAAGTCGCTGATTTCTCATCACGCG 1477
| ..||||.|||..||||.|||||||||||.|||||.||.||||
BPUM_3455___v 1435 G-------TTAAAGAGCTTAGTGAGCAAGTCGCTGACTTCTCCTCTCGCG 1477
BSNT_05825___ 1478 GTCCTGTTATGGATACGTGGATGATTAAGCCTGATATTTCCGCGCCAGGG 1527
|.||.|||.||||||||||||||||||||||||||.|.||.|||||||||
BPUM_3455___v 1478 GACCAGTTGTGGATACGTGGATGATTAAGCCTGATTTATCAGCGCCAGGG 1527
BSNT_05825___ 1528 GTCAATATCGTGAGCACGATCCCAACACACGATCCTGACCATCCATACGG 1577
||||..||.||.||.||.||||||||.|||||||||...||.||.|||||
BPUM_3455___v 1528 GTCAGCATTGTAAGTACAATCCCAACGCACGATCCTTCTCAGCCTTACGG 1577
BSNT_05825___ 1578 CTACGGATCAAAACAAGGAACAAGCATGGCATCGCCTCATATTGCCGGAG 1627
.||.||||||||.|||||||||||||||||.||.||.|||.|.||.||
BPUM_3455___v 1578 ATATGGATCAAAGCAAGGAACAAGCATGGCTTCACCGCATGTGGCTGG-- 1625
BSNT_05825___ 1628 CGGTTGCCG---TTATTAAACAAGCCAAACCA--------AAGTGGAGCG 1666
||||||.| |.|||||.|||||.|||||| || .|||
BPUM_3455___v 1626 -GGTTGCAGCGATCATTAAGCAAGCAAAACCATCTTACTCAA---CAGC- 1670
BSNT_05825___ 1667 TTGAACAGATTAAA--ACCGCCATCATGAATACCGCTGTCACTTTAAAGG 1714
|||.|||||| |..|| |.||||||||.||.| |||..
BPUM_3455___v 1671 ----ACAAATTAAAGCATTGC--TGATGAATACAGCAG-------AAAAA 1707
BSNT_05825___ 1715 ATA-GCGATG-----GGGAA-GTATATCCGCATAACGCTCAAGGCGCAGG 1757
.|| .||||| ||.|| ..||..||.||.|||.|.|||||..||||
BPUM_3455___v 1708 CTATTCGATGCAAACGGCAACCCATTCCCTCACAACACACAAGGGACAGG 1757
BSNT_05825___ 1758 CAGCGCAAGAATCAT-GAACGCAATCAAAGCCGATTCGCTCGTCTCACCT 1806
|||.|...||||.|| ||| .||.||.||||....||..||||.||...|
BPUM_3455___v 1758 CAGTGTTCGAATTATCGAA-TCACTCCAAGCGTCATCTATCGTTTCTGAT 1806
BSNT_05825___ 1807 GGAAGCTATTCATACGGCACGTTCTTGAAGGAAAACGG------AAACGA 1850
|..||.|||||.||.|||||.||||||||.|||||.|| ||.|.|
BPUM_3455___v 1807 GCGAGTTATTCTTATGGCACTTTCTTGAAAGAAAAAGGCGTTCAAATCAA 1856
BSNT_05825___ 1851 AAC-AAAAAATGAAACGTTTACGA----TTGAAAATCAATCTTCCATTAG 1895
||| ||.||||..||.||..| || ||.||||.|| || |
BPUM_3455___v 1857 AACGAAGAAATTCAAGGTAGA-GAACCTTTCAAAAGCA-----CC----G 1896
BSNT_05825___ 1896 AAAGTCTTACACACTTGAATACTCATTTAATGGCAGCGGCATTTCCACAT 1945
||| .|.|||||..||||.|||..|||..|||||||||||||...||||.
BPUM_3455___v 1897 AAA-ACATACACCATTGATTACAAATTCGATGGCAGCGGCATCAGCACAA 1945
BSNT_05825___ 1946 CCGGCAC------AAGCCGTGTTGTGATTCCGGCACATCAAACCGGGAAA 1989
.|||.|| ||.|..|| ||||| |||||.
BPUM_3455___v 1946 ACGGAACGAAGAAAATCACTG----------------TCAAA--GGGAAT 1977
BSNT_05825___ 1990 GCCA------------------CTGCAAAAGTAAAGGTCAATACGAAG-A 2020
.||| |.|.|.||||.| |||||| | |
BPUM_3455___v 1978 TCCACAGGGTCCTTTACTTCCGCCGTACAAGTGA-----AATACG--GTA 2020
BSNT_05825___ 2021 AAACAAAAGCTGGCACCTATGAAGGAACGGTTATCGTCAGAGAA---GGC 2067
||||.|||...||.||.||..||||.|...|||.|.|..|.||| |||
BPUM_3455___v 2021 AAACCAAAAAAGGAACGTACCAAGGTAGCATTACCCTTCGCGAAAATGGC 2070
BSNT_05825___ 2068 GGAAAAACGGTCGCTAAGGTACCTACATTGCTGATTGTGAAAGAGCCCGA 2117
.|||| ||||.|..||.|.||.||.||..|||||||.|||||.||.||
BPUM_3455___v 2071 AGAAA---GGTCACAGAGATTCCGACTTTATTGATTGTAAAAGAACCTGA 2117
BSNT_05825___ 2118 TTATCCGAGAGTCACATCTGTCTCTGTCAGCGAAGGGT--CTGTACAAGG 2165
|||||||.|.|||||.||.||.||||| ||.|..||.| |.||.| .||
BPUM_3455___v 2118 TTATCCGCGCGTCACTTCGGTTTCTGT-AGAGCCGGATAACCGTGC-TGG 2165
BSNT_05825___ 2166 TACCTATCAAATTGAAACCTACCTTCCTGCGGGAGCGGAAGAGCTGGCGT 2215
.|.||||...|||...|.|||.||.||||..|||||.|||.|.||.||.|
BPUM_3455___v 2166 AAGCTATGTCATTAGCAGCTATCTGCCTGGCGGAGCTGAAAACCTTGCAT 2215
BSNT_05825___ 2216 TCCTCGTCTA--TGACAGCAACCTTG------ATTTCGCAGGCCAAGCCG 2257
|||||||||| .||||| .|| |||| |||..||||.|
BPUM_3455___v 2216 TCCTCGTCTACTCGACAG-----ATGGAGAGTATTT---AGGTGAAGCAG 2257
BSNT_05825___ 2258 GCATTTATAAAAACCAAGATAAAGGTTACCA----GTACTTTGACTGGGA 2303
|..|||||.||.|....||||||||..|.|| ||| .|.|||.|
BPUM_3455___v 2258 GTGTTTATCAACATGTTGATAAAGGAGAACACCGCGTA----AAATGGAA 2303
BSNT_05825___ 2304 CGGCACGATTAAT----GGCGGAA---CCAAACTTCCGGCCGGAGAGTAT 2346
.|||||.||.||| |.|..|| |.||.|| ||.|||||
BPUM_3455___v 2304 TGGCACAATCAATCAAGGTCAAAAGCTCGAATCT-------GGTGAGTA- 2345
BSNT_05825___ 2347 TAC-TTGCTCGCATATGCCGCGAA----CAAAGGCAAGTCAAGCCAGGTT 2391
||| .||||.||.||||| || .|||||.||.|| .|.||...|
BPUM_3455___v 2346 TACAATGCTTGCGTATGC----AAGTTTGAAAGGAAAATC-CGACACTGT 2390
BSNT_05825___ 2392 TTGACCGAA-GAACCTTTC-------ACTGTGGAATAA 2421
|..|.|||| ||||||||| ||..| ||||||
BPUM_3455___v 2391 TCAAACGAAGGAACCTTTCGATATTTACCCT-GAATAA 2427
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