Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06032 and BPUM_3408

See Amino acid alignment / Visit BSNT_06032 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence dna-align/BSNT_06032___yxiC.1.24716.seq
#    -bsequence dna-align/BPUM_3408.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06032___yxiC-BPUM_3408.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06032___yxiC-BPUM_3408.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06032___yxiC
# 2: BPUM_3408
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity:     170/340 (50.0%)
# Similarity:   170/340 (50.0%)
# Gaps:         131/340 (38.5%)
# Score: 400.5
# 
#
#=======================================

BSNT_06032___      1 ATG-GCACAGGAAATTAAAAT------------GGT-------GTATGGC     30
                     ||| |||.| |||||||||||            |||       ||||  .
BPUM_3408          1 ATGAGCAGA-GAAATTAAAATAGATGCCAGTCAGGTCAAACGAGTAT--T     47

BSNT_06032___     31 ACAG--TG--AAGCAAGGGCTTTCTCA---GCTCAA--GAATTCA-----     66
                     ||||  ||  ||.|||        |||   ||||||  ||||.||     
BPUM_3408         48 ACAGCATGCAAAACAA--------TCAGGCGCTCAAATGAATGCAACACA     89

BSNT_06032___     67 -----------------GCTGAACTCAAGTCCTCCTTACCCGGCCATCTC     99
                                      |..|||.|||   .|||||.||           
BPUM_3408         90 TCCAACAACCATCAAAGGGAGAAATCA---GCTCCTGAC-----------    125

BSNT_06032___    100 TCAGGCAGAAACCATTTGAATGTTGTGAAGTCCATCGAGCAATTAAA---    146
                        ||||||.| ||||.|||      .||.||.||| ||||..||||   
BPUM_3408        126 ---GGCAGACA-CATTAGAA------AAAATCAATC-AGCAGCTAAACGA    164

BSNT_06032___    147 --TGAGGACATCAAAGAGCTCACTGAAGCATATGCGTCCGTTCTTGCCAA    194
                       |.||.|||||..|             ||||.|    |.|||||...||
BPUM_3408        165 ATTAAGTACATCCTA-------------CATAGG----CATTCTTCAGAA    197

BSNT_06032___    195 GCATATTGCACAAACGGAAAGCGCGGTAAACGCTATGAAGGAAACGGACG    244
                     .||..|||.||||||.|||...|||||||||.|.||||..||||||||| 
BPUM_3408        198 ACAACTTGTACAAACAGAACAAGCGGTAAACACCATGATCGAAACGGAC-    246

BSNT_06032___    245 AAAA----CATATCATCTTCCATG----------AAATAA    270
                       ||    |.|    .|||||| |          ||||||
BPUM_3408        247 --AAGGCGCTT----GCTTCCA-GCAGTAAAAGAAAATAA    279


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