Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05461 and BPUM_3250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_05461___gerBC.1.24716.seq
# -bsequence dna-align/BPUM_3250___gerBC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05461___gerBC-BPUM_3250___gerBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05461___gerBC-BPUM_3250___gerBC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05461___gerBC
# 2: BPUM_3250___gerBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1328
# Identity: 702/1328 (52.9%)
# Similarity: 702/1328 (52.9%)
# Gaps: 385/1328 (29.0%)
# Score: 1710.0
#
#
#=======================================
BSNT_05461___ 1 -----ATGAAGAC----AATGCTGAAACTTTTTGTAATGGTTCTGATGCT 41
|.|||||| |.||.|.| ||||| ||.|..||||
BPUM_3250___g 1 ATGAGAGGAAGACGTGTATTGTTCA---TTTTT-------TTGTCTTGCT 40
BSNT_05461___ 42 GCAGATGCTCTGC------------GGATGCTGGGATGTAAAAAATATTG 79
| .||||.| |||||||||||..|||||.||||||
BPUM_3250___g 41 G-----TCTCTTCCTTCTATCAGCAGGATGCTGGGACTTAAAAGATATTG 85
BSNT_05461___ 80 AAAAATTGTCTTTCGCGAGAGGACTTGCGCTCGATGAAACGGATGACC-- 127
|||||||.||.||.|.|.|.||..|||...|.||||| |||.||.|
BPUM_3250___g 86 AAAAATTATCATTTGTGCGCGGCGTTGGAATAGATGA---GGAGGAACAG 132
BSNT_05461___ 128 --ACCAGTATAAATTAACATACCAAAACCTTCTTCCCCAAAGTGAAGACA 175
|..||| |||..|.||.|||||||||||..|.|| |||||..
BPUM_3250___g 133 AAAGGAGT-TAAGCTCACTTACCAAAACCTGGTGCC-------GAAGATG 174
BSNT_05461___ 176 GCCAAGCATCCGGAAAAC------CCGAATT----------TGTTAATGT 209
| .|||||.|| ||| ||| |||.||.||
BPUM_3250___g 175 G--------GCGGAACACAAGAGGCCG-ATTCTCCTGGCTATGTAAACGT 215
BSNT_05461___ 210 GACATCCC--ATGGGAAAACCATTCTAGAAGCAGTCAGTGATGTATCCAT 257
|.||.| |.|||||||.|.|.||.||.||.||||||.||||..||.|
BPUM_3250___g 216 --CGTCTCGAAGGGGAAAAACGTGCTGGAGGCTGTCAGTAATGTCGCCTT 263
BSNT_05461___ 258 CAAGGACCCTCCTATTTATAGCGATCATTTAAAAGTCATTCTTCTTGGAG 307
.||||||||.||.||.|||||.||||||.|||||.||.||||..|.| |
BPUM_3250___g 264 AAAGGACCCGCCAATCTATAGTGATCATCTAAAAATCTTTCTGTTCG--G 311
BSNT_05461___ 308 AAAAGCTAATGAGGAATCAA----AACATAGATCAGG----TC------- 342
.|||| ||||| ||| ||||.| ||
BPUM_3250___g 312 CAAAG----------ATCAAGCAGAAC----ATCACGATATTCAAGGAAC 347
BSNT_05461___ 343 -TTCAATCATTTTATCCGGGATGATGAGCTGCGGCGCAGCAGCTAT---- 387
.|||||||||||||.||.||||||||..|.|||||.|||||||||
BPUM_3250___g 348 GCTCAATCATTTTATTCGAGATGATGAAGTTCGGCGAAGCAGCTATCTCC 397
BSNT_05461___ 388 ------------TTGATGGCAGCAAGAGGGAAAGCCGGAGATATT--TTC 423
.|||| |||.|||.|| ||.| .||
BPUM_3250___g 398 TCGTGTCACGTGGTGAT-GCATCAAAAG-------------TAATCAATC 433
BSNT_05461___ 424 ACAAAAGGAAGTCCGAAGCAGCAGCTGCCGATGCCTTCCGAAAAG---CT 470
|.|||..|||.|| .|||| ||||| |.
BPUM_3250___g 434 AAAAATTGAAATC-------ACAGC---------------AAAAGGTTCC 461
BSNT_05461___ 471 AATTGA-------TCTGA-----CCAATAACAGCGGGTATAACGGGAAGA 508
|.|||| |.||| ||||.|||.|....|.||||||.||||
BPUM_3250___g 462 AGTTGAACATATCTTTGAAACATCCAAAAACCGAAACTTTAACGGAAAGA 511
BSNT_05461___ 509 TTATGATGCCGCTTCGTATCGGCAGAGCTTCT-ATCTATTGCCAAAATGG 557
|..|..||||....|||||.|||.|.||.||| || ||.|.|||.|..||
BPUM_3250___g 512 TCTTACTGCCAACACGTATTGGCCGGGCATCTGAT-TACTTCCAGATGGG 560
BSNT_05461___ 558 CTACAGTTTTCTTATTCAAGCCGTGAAAAACCAAAAGGGAAAAGCCAAGT 607
|...||.||.|||.| |||||..|.|.|.||.| |
BPUM_3250___g 561 CGTGAGCTTCCTTGT---------------CCAAAGTGTAGACGCGA--T 593
BSNT_05461___ 608 ATGACG--GAGCAGGCATTATCAA--AAGGGGCAGCAAT----------- 642
| |||| |||| |||||.| |.|||||||.|||
BPUM_3250___g 594 A-GACGGCGAGC-----TTATCTATGATGGGGCAGGAATCATTCACGGTA 637
BSNT_05461___ 643 --------AAACTCGTTGGGTTTCTTTCAGCT------GATG-------- 670
||.|| |.|.||.|||.|.| || ||||
BPUM_3250___g 638 AAAACCGAAAGCT-GATCGGATTCATCC--CTGCAAAGGATGTCCAATCT 684
BSNT_05461___ 671 --AAACCCAGACACTGACATGGGTCATGGGGAC--AATCCAAGGCGGTGT 716
|||| |||||.|| |||| ||||..||||||.||
BPUM_3250___g 685 TTAAAC-------------TGGGTGAT--GGACCGAATCTCAGGCGGCGT 719
BSNT_05461___ 717 CATGCCAACGACAGATAAAGGTCATCCGATTACGTTTGAAATCAAAAAAT 766
..|.|||.|.||..|.|||||...||||||.||.|.||||||.||.|||.
BPUM_3250___g 720 TGTACCAGCTACTTACAAAGGCTTTCCGATCACATATGAAATTAAGAAAG 769
BSNT_05461___ 767 CGAAAACGAAAATTAAGCCCGTCATTGACAACGGAAA-----GCCTGT-- 809
|.|||||.||.|||.|.|| || |.|.|||| ||.|.|
BPUM_3250___g 770 CCAAAACTAAGATTGAACC-----TT---ATCTGAAAGATGGGCATATTT 811
BSNT_05461___ 810 -CTTTCAGATTTCTGTTAAAACGAAGGGCATCCTGACAGAAGACCA-AAA 857
||||.|||||..|||.||.||.||.||.|..||..|.|||||.|| .|.
BPUM_3250___g 812 CCTTTAAGATTATTGTCAACACAAATGGAAAGCTTTCTGAAGATCAGTAT 861
BSNT_05461___ 858 CCCGAATGAAAACTCCT----TTAGCA--------AAAGATATTTGCACA 895
||.|.| ||||||||.| |.|||| ||||||
BPUM_3250___g 862 CCTGCA-GAAAACTCATACGATGAGCAGTACATCCAAAGAT--------- 901
BSNT_05461___ 896 GGCTGGAGAACATTTTTGAGAAAAAGCTTGAACGAGACGTAAAGCAGGTG 945
|.|||....||||||..||.||..|..||| |||| |
BPUM_3250___g 902 ---TTGAGCGTCTTTTTGCAAATAAAATCAAAC-------AAAG-----G 936
BSNT_05461___ 946 ATGGATAAA---CTGCAGCACGAGTATAAAA----------CCGATCCGG 982
||..|.||| .|.||.||.|.|.| |||| ..|||||..
BPUM_3250___g 937 ATTCAAAAAGCGGTTCATCATGTGCA-AAAAGAGGTGGGCGTTGATCCTA 985
BSNT_05461___ 983 TCTTTTTATCAGAC--CACATAAGGATTCAACACCCTGACTATTGGAATA 1030
|||||||| ||.| ||..|..|.|||.||.||||||||||||||.|.|
BPUM_3250___g 986 TCTTTTTA--AGCCGGCAATTTCGTATTAAATACCCTGACTATTGGGAAA 1033
BSNT_05461___ 1031 AAGTAAAAGGGCAT---------TGGGATGAAATATTTTCTGAGGCTGAT 1071
| |||| |||||||...|.|||...||.||.||.
BPUM_3250___g 1034 A---------GCATCGAGACGAATGGGATGCGCTCTTTCAAGAAGCGGAA 1074
BSNT_05461___ 1072 TTTAAGTACGATATTTCTTTTAAAATCA------TTAACTTTGGCACGGT 1115
.|..|.||.|| |.|.|||.||| |.||||||||..|.|.
BPUM_3250___g 1075 ATCGAATATGA------TGTCAAAGTCAGCATTTTAAACTTTGGGGCAGA 1118
BSNT_05461___ 1116 GGG----------------AAA--GTAA 1125
||| ||| ||||
BPUM_3250___g 1119 GGGCTCAACGAAAAGCTTCAAATGGTAA 1146
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