Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02177 and BPUM_3157
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_02177___ykcB.1.24716.seq
# -bsequence dna-align/BPUM_3157.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02177___ykcB-BPUM_3157.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02177___ykcB-BPUM_3157.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02177___ykcB
# 2: BPUM_3157
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2404
# Identity: 1408/2404 (58.6%)
# Similarity: 1408/2404 (58.6%)
# Gaps: 533/2404 (22.2%)
# Score: 3935.5
#
#
#=======================================
BSNT_02177___ 1 GTGGAAAAGA-------AAAAACGCGAGCTGGA--TATTTTCCTCATCCT 41
|.||..||| |||||...||.||..| |||||| ||||..|
BPUM_3157 1 -TTGATTAGACGCTTTCAAAAATTTGATCTTTATTTATTTT--TCATATT 47
BSNT_02177___ 42 CATTTTGCTCGCATCTG-CATTCTTAAATATCTATAACATCTGGAATGAT 90
.||||| ||||| |||| |||||.||.||||||||.|||||..|.
BPUM_3157 48 AATTTT------ATCTGCCATT-TTAAACATTTATAACATTTGGAACAAC 90
BSNT_02177___ 91 GATACGGTGAATCCTTATTACACCGCTGCAGTCACAAGTATGATGCAAAG 140
|||||.|||||..|||||||.|||||.||.||||||||||||||||||||
BPUM_3157 91 GATACAGTGAACGCTTATTATACCGCAGCGGTCACAAGTATGATGCAAAG 140
BSNT_02177___ 141 CTTTCATAATTTTTTCTATGCCTCATTCGACGCGGCGGGGTTTATAACGG 190
||..||||||||.||||.|.|.||.|||||..|..|.||.|.|.|.||||
BPUM_3157 141 CTGGCATAATTTCTTCTTTACTTCGTTCGATCCCTCAGGTTATGTCACGG 190
BSNT_02177___ 191 TTGATAAACCGCCTATTACGTTTCAGATACAAACCATCAGCGCACTTATA 240
|.||||||||.||..|..|.||...|.|.|||||.|||||.||....||.
BPUM_3157 191 TGGATAAACCACCGCTCGCCTTCTGGCTGCAAACGATCAGTGCCAAAATT 240
BSNT_02177___ 241 TTCGGTATGCACGGCTGGAGCGTCATCCTGCCTCAGGCACTTGCTGGTGT 290
|||||..||||.||||||||.||.|||.|.||.||.||..|.|||||..|
BPUM_3157 241 TTCGGACTGCATGGCTGGAGTGTGATCTTACCCCAAGCTTTAGCTGGCAT 290
BSNT_02177___ 291 AGGTTCTGTCCTTTTAATGTATCTGTTAATAAAACCGACATTCGGTAAGA 340
.||.||.||...||||||.||||...||.|.|||||.|||||.||..||.
BPUM_3157 291 TGGATCAGTTTATTTAATCTATCGCCTAGTCAAACCTACATTTGGGCAGG 340
BSNT_02177___ 341 CAGCAGCAAGAATTGCCTCTTTCATCATGGCATGTACACCGATTGCTGTA 390
|.||.||||||.|..|..|..||||.|||||.||.|||||.||.||.||.
BPUM_3157 341 CTGCTGCAAGACTGTCAGCACTCATTATGGCGTGCACACCAATCGCAGTT 390
BSNT_02177___ 391 GCTGTAGCACGTACAAACAATGTTGATGCA--TTACTGGTATTT-TTCTT 437
||||||.|.||||||||.||..|||| || |||||.||.||| |||||
BPUM_3157 391 GCTGTATCTCGTACAAATAACATTGA--CAGCTTACTCGTTTTTATTCTT 438
BSNT_02177___ 438 ATTGCTTGCTACATGGC-------TTC---TCTTTAAAGCGATCAGAAAA 477
||.||.||.||| || ||| .||.||||.| |.|||
BPUM_3157 439 -TTACTCGCAACA--GCCATGATGTTCAAGGCTGTAAAAC-AGCAG---- 480
BSNT_02177___ 478 GGAAAGCTGATCTGGCTGTTAGCAGCATTT--TTCGTTGTTGGA------ 519
|||.|..|.||| |||.|| ||| |.|||.|
BPUM_3157 481 ---AAGGTACTTTGG---------GCAATTGCTTC--TTTTGCAATGATC 516
BSNT_02177___ 520 -GTA--GGATTTAATACAAAAATGCTGCAGGCTTACATGATTTTACCGGC 566
||| ||.|||||||||||||||||.||.||.||.||||||.|||||||
BPUM_3157 517 GGTATCGGTTTTAATACAAAAATGCTTCAAGCGTATATGATTGTACCGGC 566
BSNT_02177___ 567 TTTCTTATTGTTCTATCTGATTGC--GGCAAACGCCACAATCAAGAAAAA 614
|.||.|.|||||.||..|.||.|| ..|.|||| |||...||||||||
BPUM_3157 567 TCTCGTCTTGTTTTACATCATCGCCTTCCGAACG--ACATGGAAGAAAAA 614
BSNT_02177___ 615 ---------------------AATCGT--TTCATTGGTAAGTGCGTTAGC 641
|||..| |||.|| ||||||
BPUM_3157 615 GTTGTTATCACTATTGATCTCAATGATTGTTCTTT--TAAGTG------- 655
BSNT_02177___ 642 CGTATTAGCAGCCGTTTCGT-TATCGTGGCCGCTCATTGTCGACAATATC 690
||.|.||...||.|| |||.|.||..|.|| || |.|||
BPUM_3157 656 -----TATCTGCTTCTTGGTCTATAGCGGTTGATC----TC----ACATC 692
BSNT_02177___ 691 CCTGCAAG-CAAGCGGCCTTATATCGGAAGCAGCCAAACCAACTCTGTTT 739
| .||| .||.||.||||||||.|||...||.|||.|.|||||.|...
BPUM_3157 693 C---AAAGATAATCGTCCTTATATGGGATCAAGTCAATCGAACTCAGCAC 739
BSNT_02177___ 740 TGGAATTGGCTTTCGGCTATAACGGAATCCAGCGGCTGACAGGCCAA--- 786
|.|||||.||.||.||.||.|||||..|.||||||.|.||.||.|||
BPUM_3157 740 TAGAATTAGCCTTTGGTTACAACGGTCTTCAGCGGTTAACTGGACAACAG 789
BSNT_02177___ 787 --------------------AATTCAGGCGGCGG---------------- 800
||.|||||.||.||
BPUM_3157 790 TCTGGCGGGAGAGGCGGTACAAATCAGGGGGAGGGGCAGCCACCTTCACA 839
BSNT_02177___ 801 CCAGGGTG---CGCCAA---ACAAAGACGCTTCAAAAGAAATGTCT---- 840
.||||||| .||.|| ||||.||..|.||.| |.|||.||
BPUM_3157 840 GCAGGGTGATCAGCAAAATGACAATGAATCATCCA---ACATGACTCAGC 886
BSNT_02177___ 841 -----TCTTCTGATAA-------CACTCAAGC-------ACCGCCTAATC 871
||...||.||| .|||||..| ||| ||||
BPUM_3157 887 CGCCATCCAGTGGTAATCAAAACAACTCAGACAATTCAAACC----AATC 932
BSNT_02177___ 872 AGTCATCAAGCAACAG-CT-------------CATCAAGCGATGGTAAAT 907
|.|||.|.|||||||| || ||.||.||..||
BPUM_3157 933 ATTCAACCAGCAACAGACTTCAATGCAAGGACCACCACGCAGTG------ 976
BSNT_02177___ 908 CCTCAAATGG--CAATATGGCGGCGCCTCCATCCAATGGCCAAATGCCAA 955
||||.|| ||||| |||.|..|| |||||..
BPUM_3157 977 ---CAAACGGTACAATA-----------CCACCTGAT------ATGCCTT 1006
BSNT_02177___ 956 GCGGCGGTCA-AG-GA-GGCCCTCCAAGCGGCGGAGATGGCGGCCAAGGC 1002
..||||||.| || || ||.||||||| |||||||
BPUM_3157 1007 CAGGCGGTAATAGTGATGGACCTCCAA---------ATGGCGG------- 1040
BSNT_02177___ 1003 GGACCCGGCGGAGACGGA-GGGAAAGGCGGTACAGGAACCGGTTCGAAAA 1051
.||||||.| || ||||| ||
BPUM_3157 1041 -----GGGCGGAAA--GATGGGAA-----------------GT------- 1059
BSNT_02177___ 1052 TGCAATCAGGTTCAGGGATGTTTGGAACGGGAACACCTGGTCCACTGCGG 1101
|||||.||.|||||||||||.||||||...||.|||.|.||.
BPUM_3157 1060 --------GGTTCTGGCATGTTTGGAACAGGAACAAAAGGGCCATTACGT 1101
BSNT_02177___ 1102 CTTTTCCAACAAGAGTTATCTGATCAAATCAGCTGGCTTCTGCCATTTGC 1151
||.||||||...||.||.||.|||||||||||.|||||.||.||||||||
BPUM_3157 1102 CTGTTCCAATCTGAATTGTCCGATCAAATCAGTTGGCTGCTTCCATTTGC 1151
BSNT_02177___ 1152 GATTT---------TTGGAATC---------GCAGGCTTACTGATCGCTG 1183
|.|.| ||||.||| .|||.|||
BPUM_3157 1152 GCTCTTCGGTGCGATTGGTATCTTCTTCTCGACAGTCTT----------- 1190
BSNT_02177___ 1184 GCGCGAGAGAAAGAAGAAGATTATC--TATAGAGCAGAAGGAAACGGTGT 1231
.|||||||||.| |.|| ||.|.|.||.||.|||||..|.|
BPUM_3157 1191 -------TGAAAGAAGACG--TCTCAATACAAAACAAAAAGAAACACTAT 1231
BSNT_02177___ 1232 TCTGGGTTGCGTGGCTTGTACCGATTGCCGGATTCTTCAGTGTCGCAGAA 1281
|.|||.|.||.||||||.||||..||||.|.|||.||||||.|.||||.|
BPUM_3157 1232 TTTGGTTAGCTTGGCTTATACCCGTTGCTGCATTTTTCAGTATAGCAGGA 1281
BSNT_02177___ 1282 TTTTTCCATCATTATTATCTCATCATGCTGGCACCGCCGATTGCGGCTCT 1331
|||||.|||||.||||||.|.|||||||||||||||||.|||||.| |.|
BPUM_3157 1282 TTTTTTCATCACTATTATTTAATCATGCTGGCACCGCCAATTGCTG-TAT 1330
BSNT_02177___ 1332 T-GTCGGTGCGGGATGGGTTGCTCTTGTTCATCTGTACCGCAATCAG--A 1378
| |..||.||.||.||||||.||.|...|||..|||.| |||.||| |
BPUM_3157 1331 TAGCAGGAGCCGGCTGGGTTTCTATGACTCAATTGTTC--CAAACAGGAA 1378
BSNT_02177___ 1379 CAGGCTGGAAAGCATGGCTTTTGCCGGGAGCAATTATTGCG--------- 1419
|.||||..|||..||||||..|.|| |||||||
BPUM_3157 1379 CTGGCTTTAAAAAATGGCTGCTTCC---------TATTGCGATATTCGTC 1419
BSNT_02177___ 1420 ACAACTGGATTTGAATTGTTTATTCTCAGAAACTACA---------ACGA 1460
|||||.|.|||||||.|..||||.|| |.|.||| ||||
BPUM_3157 1420 ACAACCGCATTTGAAATCCTTATCCT----ATCCACATTTACAAGCACGA 1465
BSNT_02177___ 1461 T----------CAAATCGGTGCAGGCTGGAGCATCGGTGTAGGTGTTATC 1500
| |.||.||.|||||.|.|.|.|||.|||.|.||
BPUM_3157 1466 TCGGTCTTGGACTAAGCGTTGCAGTCGGTATCATTGGTATTGG------- 1508
BSNT_02177___ 1501 GGCGTGTTGTCAGCGATTGCTTT-GCTGCTGTTTA-------AACAGCGC 1542
|.||| |.|||| .||.||.||.| ||.||
BPUM_3157 1509 -----------AACGA-TCCTTTCTCTACTTTTGATAAAAGGAAAAG--- 1543
BSNT_02177___ 1543 CAAAAACCGTT----CAGTTATT-ATGTTTCACTTGCAGCTCTCCTCGCA 1587
|||||| | || ||| .||| |||||.||||.
BPUM_3157 1544 -AAAAAC---TAAAACA---ATTCGTGT-----------CTCTCATCGCC 1575
BSNT_02177___ 1588 TTGCTGGTGATGCCGATT---------TACTGGGCAAGTACACCGCTTCT 1628
.|.||.|..|||..|||| |||||||||||.|||||.|||||
BPUM_3157 1576 ATCCTTGGCATGATGATTGCACCACTATACTGGGCAAGCACACCTCTTCT 1625
BSNT_02177___ 1629 GTACGGAGGCAACAGCTCACTGCCTGAAACAGGCCCTCAGCTCGCA---T 1675
.||.|||||.|||||....||.||.||.||.||.||||||||.||| |
BPUM_3157 1626 TTATGGAGGAAACAGTATGCTTCCAGAGACTGGTCCTCAGCTTGCAACTT 1675
BSNT_02177___ 1676 CAATGAGCGGAAAAGGCATGGG-----AATGTCTGATGCGACTGTAAATG 1720
|| ||.||.| |||||.| || ||.||||
BPUM_3157 1676 CA---AGTGGCA---GCATGAGTTCACAA--------------GTCAATG 1705
BSNT_02177___ 1721 AAAAACTGATCAAATATCTAGAGGAGAATAACTCCGGAGCTGAATACCTA 1770
||||.||||||||.|||||.||..|.||.||..|.||||..||||.||||
BPUM_3157 1706 AAAAGCTGATCAACTATCTTGAAAAAAACAATACGGGAGAAGAATTCCTA 1755
BSNT_02177___ 1771 TTCGCCACAACCGATTCGAACACAGCGGCACCATATATCATTAAAACGAA 1820
||||..|||||.|||.|.|.|||.||..|.||.||.||.||||||||...
BPUM_3157 1756 TTCGGAACAACAGATGCAACCACTGCTTCGCCTTACATTATTAAAACAGG 1805
BSNT_02177___ 1821 AAAAGCTGTCATGGCTATT-GGCGGATACAGCGGTTCTGA-------CCC 1862
|||||||||.||||| ||| ||.||||..||.||.||||| |
BPUM_3157 1806 AAAAGCTGTTATGGC-ATTAGGTGGATTTAGTGGATCTGATAACATTC-- 1852
BSNT_02177___ 1863 GGCGATCACACTGACTCAATTCAAAAAACTTGTAAAAGAAGGAAAAGTGA 1912
|||||||.|.|.|||||||..|..|.||.|||||.||.|||.|.|
BPUM_3157 1853 -----TCACACTTAGTGAATTCAAGCAGTTCGTCAAAGACGGTAAAATCA 1897
BSNT_02177___ 1913 AATACTTCTTGGCTTCTGGAATGGGAAGAGGCGGAAACAATGACATTGTT 1962
|||||||||....||||||.||| ||||||||.|.|..|||||||.|.
BPUM_3157 1898 AATACTTCTATCTTTCTGGTATG---AGAGGCGGTAGCTCTGACATTCTC 1944
BSNT_02177___ 1963 GAATGGGTTGAGAAAAATGGAAAAGAAGTAGCATCAGAAAAATGGCA-AT 2011
...|||.||.|.||||||||||||||||||||..|....||.||||| |.
BPUM_3157 1945 ACTTGGATTCAAAAAAATGGAAAAGAAGTAGCTACTTCTAACTGGCAGAA 1994
BSNT_02177___ 2012 CAAGTTCT-GATCAAA----AAACAGAAAATACTGATTCGGCTGATACAT 2056
| ||.||| .|||.|| ||.|||.|| ||.|| |.|||.|.|||.
BPUM_3157 1995 C-AGCTCTACATCCAAAACGAATCAGCAA--ACAGA--CAGCTCAGACAG 2039
BSNT_02177___ 2057 CAAGCAGCAAGGCTTCAGGTGAAAA----CGGCAAAATGGGCGGACCT-G 2101
| ||.||| ||||...|||| |.|...|||||.||.| | |
BPUM_3157 2040 C---CAACAA----TCAGAACAAAATAATCAGTCTAATGGACGAA--TGG 2080
BSNT_02177___ 2102 GCGGAATGAATCAGTCAGCAACA----TTATACGAACTACATGCTGATGA 2147
|||||||| |..|||..|| ||||| |||||...|.||||.|
BPUM_3157 2081 GCGGAATG-----GAGAGCGGCACTCTTTATA--AACTATCCGTTGATTA 2123
BSNT_02177___ 2148 ATAG 2151
|
BPUM_3157 2124 A--- 2124
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