Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05344 and BPUM_3146

See Amino acid alignment / Visit BSNT_05344 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:57
# Commandline: needle
#    -asequence dna-align/BSNT_05344___yvkN.1.24716.seq
#    -bsequence dna-align/BPUM_3146.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05344___yvkN-BPUM_3146.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05344___yvkN-BPUM_3146.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05344___yvkN
# 2: BPUM_3146
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 265
# Identity:     156/265 (58.9%)
# Similarity:   156/265 (58.9%)
# Gaps:          68/265 (25.7%)
# Score: 431.5
# 
#
#=======================================

BSNT_05344___      1 ATGGAGAAAGATCCCAGTGACTATACAGTAA-CACAAG----AATCAGTG     45
                        ..||.|||||   .|.|..||||  ||| ||.|.|    ||.|..|.
BPUM_3146          1 ---TTGACAGATC---ATCATAATAC--TAACCAGACGGCTCAAACGCTT     42

BSNT_05344___     46 TTAAAGCTGATTCATGAACAAAAAAGAATGAATCGTGAAATGATCGCCGA     95
                     |||.|.||.||.||..||||||||||.|||||..|.||.||||||...||
BPUM_3146         43 TTAGACCTTATACAGAAACAAAAAAGCATGAACAGCGATATGATCAGGGA     92

BSNT_05344___     96 GCTTGAGCAGATTCACGGACCCTTCCCGATC--TCTCA------------    131
                     ||||||           ||||.|||   |||  |||||            
BPUM_3146         93 GCTTGA-----------GACCATTC---ATCCGTCTCATCCTAAGTATGG    128

BSNT_05344___    132 CGATATCCAATATATAAAAGTGCTGCTCGACAGCAGCAACACGCATATTG    181
                     .|||||||..|||.||||.||.||||||||||||||||.|||||||||| 
BPUM_3146        129 TGATATCCGTTATTTAAAGGTACTGCTCGACAGCAGCAGCACGCATATT-    177

BSNT_05344___    182 TTCAA-GATTTAATGAGTGTAAGTAAG-CAGCTGTATAA--------GAA    221
                     ||.|| |||||||    .|.||.|.|| ||    |.|||        |||
BPUM_3146        178 TTAAAGGATTTAA----CGCAACTCAGTCA----TTTAATGCCAAAGGAA    219

BSNT_05344___    222 GACTTTG-----TAA    231
                     ||   ||     |||
BPUM_3146        220 GA---TGCGCAATAA    231


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