Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04860 and BPUM_2936

See Amino acid alignment / Visit BSNT_04860 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_04860___yusF.1.24716.seq
#    -bsequence dna-align/BPUM_2936.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04860___yusF-BPUM_2936.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04860___yusF-BPUM_2936.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04860___yusF
# 2: BPUM_2936
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 477
# Identity:     238/477 (49.9%)
# Similarity:   238/477 (49.9%)
# Gaps:         159/477 (33.3%)
# Score: 605.0
# 
#
#=======================================

BSNT_04860___      1 ATGTTGGCGGTGAATTTCACTGCCTTCTTTTACAATCTGAACGTTTCAAA     50
                                                                       
BPUM_2936          0 --------------------------------------------------      0

BSNT_04860___     51 TTTGCCGCGGCAGGTGAACAAGATGAAGATCGATGAGCTGGAAAAGGTAA    100
                                  ||||.|..||||||   .|..|||.|.||||||||.|
BPUM_2936          1 -------------GTGATCGTGATGAA---TGTAGAGGTAGAAAAGGTCA     34

BSNT_04860___    101 TGATTGTCGAGGGGAAATCAGATAAAGAGAA---AATCGAAAGCGTCCTG    147
                     |.||.||.||.||.|||.||||.|||.|.||   ||..|||   |||.|.
BPUM_2936         35 TCATAGTAGAAGGTAAAACAGACAAACAAAAGCTAAAAGAA---GTCATA     81

BSNT_04860___    148 AATGAACCGGTGCGCATTATCTGCACAAACGGAACAATCAG-CCAGCTGA    196
                     |.||||||.||...|||.||.|||||.||.||.||.||||| .||.| ||
BPUM_2936         82 AGTGAACCTGTTACCATCATTTGCACCAATGGCACGATCAGTACATC-GA    130

BSNT_04860___    197 GGCTCGAGGAATTGGCT----GACGAGCTTTAT--GATAAAGACGTCTAT    240
                     .|||    |.||..|||    |||||  .||||  |..||||||||.||.
BPUM_2936        131 AGCT----GGATCAGCTCGTAGACGA--ATTATTGGGGAAAGACGTTTAC    174

BSNT_04860___    241 ATATTAGTTGATGCTGATGAATCAGGTGAGAAATTGAGAAAACAGCTGAA    290
                     |||||||..||...|||.||..||||.||         .||||.||.|||
BPUM_2936        175 ATATTAGCAGACAGTGACGATGCAGGCGA---------CAAACTGCGGAA    215

BSNT_04860___    291 GCGTGAATTT-------AA-----TGAAGCCTGC--CATCTCCATATCGA    326
                     ||   |||||       ||     ||||||  ||  |||||...|.||||
BPUM_2936        216 GC---AATTTCGAAAAGAATTCCCTGAAGC--GCTTCATCTTTTTGTCGA    260

BSNT_04860___    327 CAGAGCCTATAAGGAAGTAGCGGCTGCGCC--CAGGCACCATGTCGCCTC    374
                     ||||.|.||....|||||.||.|||.|.||  |||  .|||..|.||.||
BPUM_2936        261 CAGAACGTACCGCGAAGTGGCCGCTTCACCGTCAG--CCCACATTGCATC    308

BSNT_04860___    375 T---GTATT-GCTGCGTGCGAATC--TGAATGTCCAT----ACTATTTTT    414
                     |   .|||| |||||     ||.|  || ||||.|||    |.|||||  
BPUM_2936        309 TATCCTATTAGCTGC-----AAACATTG-ATGTTCATTCGAAATATTT--    350

BSNT_04860___    415 CTTGAAAGAAAGTCCCGAGGTGTATAG    441
                      .|||                      
BPUM_2936        351 -ATGA----------------------    354


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