Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02166 and BPUM_2740

See Amino acid alignment / Visit BSNT_02166 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_02166___xhlB.1.24716.seq
#    -bsequence dna-align/BPUM_2740___xhlB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02166___xhlB-BPUM_2740___xhlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02166___xhlB-BPUM_2740___xhlB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02166___xhlB
# 2: BPUM_2740___xhlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 301
# Identity:     178/301 (59.1%)
# Similarity:   178/301 (59.1%)
# Gaps:          74/301 (24.6%)
# Score: 524.0
# 
#
#=======================================

BSNT_02166___      1 ATGAACACGTTTGACAAGGGCACGGTCATCAGGACGGTGCTTCTTTTAAT     50
                     |||||.||.||.|||||.|||||.||.||..|.||.|||||||||||.||
BPUM_2740___x      1 ATGAAAACATTCGACAAAGGCACTGTGATTCGCACAGTGCTTCTTTTTAT     50

BSNT_02166___     51 TGCTTTAATCAACCAGAC------CATGCTGATGCTCGGCAAATCACCAT     94
                     |||..|.|||||.||.||      ||||.|     |.||||         
BPUM_2740___x     51 TGCACTCATCAATCAAACGCTTGTCATGTT-----TGGGCA---------     86

BSNT_02166___     95 TGGAC----------ATTCAG-GAGGAGCAGGT-CAATCAGCTCGCTGAC    132
                       |||          ||| || ||||||||.|| |||.||||| |.|||.
BPUM_2740___x     87 --GACGGTGCTGCCGATT-AGTGAGGAGCAAGTACAAACAGCT-GGTGAG    132

BSNT_02166___    133 GCCCTTTATTCAGCCGGTTCCATTGCATTTACAATTG-GAACGACACTTG    181
                     ||.||.|||..|||.|||||||....||||||.||.| ||..|.|| ||.
BPUM_2740___x    133 GCGCTATATGTAGCAGGTTCCACCATATTTACGATGGTGACAGCCA-TTA    181

BSNT_02166___    182 CCGCTTGGTTTAAAAACAACTATATAACAGAAAAAGG-------------    218
                     .||||||||||||||||||.|||.|.||..|.|||||             
BPUM_2740___x    182 TCGCTTGGTTTAAAAACAATTATGTGACCTACAAAGGTCATTTACAAAAA    231

BSNT_02166___    219 GAAA-----AAACAGCGCGACTTGTTAAGGGACAATAATCTGACGAAATA    263
                     ||.|     |||||..|          ||||        ||.||.|||||
BPUM_2740___x    232 GATACCCTGAAACAAAG----------AGGG--------CTAACAAAATA    263

BSNT_02166___    264 A    264
                     |
BPUM_2740___x    264 A    264


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