Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03809 and BPUM_2291
See
Amino acid alignment /
Visit
BSNT_03809 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_03809___comEC.1.24716.seq
# -bsequence dna-align/BPUM_2291___comEC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03809___comEC-BPUM_2291___comEC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03809___comEC-BPUM_2291___comEC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03809___comEC
# 2: BPUM_2291___comEC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2709
# Identity: 1443/2709 (53.3%)
# Similarity: 1443/2709 (53.3%)
# Gaps: 786/2709 (29.0%)
# Score: 3313.0
#
#
#=======================================
BSNT_03809___ 1 -------------------ATGGCGGCAGCTTCGGCAACGGCTGGAATTA 31
.||| ||||..|||.|||.|.|.|||||||.
BPUM_2291___c 1 ATGTTTAATTATTTGCCGTTTGG-GGCAATTTCAGCAGCTGTTGGAATTG 49
BSNT_03809___ 32 CTGCCGCCGC---------------TTATTTCCCCGCTATTTTTCTTTTC 66
||...||.|| .||||||| .|.|.||||||.||
BPUM_2291___c 50 CTCTAGCTGCATATCATCTTCATATGTATTTCC---TTCTCTTTCTTCTC 96
BSNT_03809___ 67 ATCCTCTTTCTCCTCATCATTTTAATCAAAA---CGAGGCACGCT-TTTC 112
||..||||.||.||||.|.|..|||..|||| | ||..|| ||||
BPUM_2291___c 97 ATTATCTTACTTCTCAGCCTACTAAAAAAAATCCC----CAAACTCTTTC 142
BSNT_03809___ 113 TCAT--------TATTGT----TTGTTT-----CTTCTCTTTTATATT-- 143
||.| || ||| .|||.| |||.| ||||||..|
BPUM_2291___c 143 TCGTGGTCAGCCTA-TGTGGAGCTGTCTATACCCTTAT-TTTTATGGTTC 190
BSNT_03809___ 144 ----GTTTTTTGTA----------CTGTATGCAGTCACAGATTCTCAGAA 179
||||||||.| |||| ||| ||| |.||
BPUM_2291___c 191 ATGAGTTTTTTGAAACAGATCAACCTGT------TCA-AGA-----AAAA 228
BSNT_03809___ 180 TGTCTCTTCCTATCGGCAGGGAACCTATCAATTCAAGGCAGTGATTGACA 229
| |||.||| |||| ||..|| ||||||||.|
BPUM_2291___c 229 T-TCTTTTC----CGGC----------TCCGTT-------GTGATTGAAA 256
BSNT_03809___ 230 CTATTCCCAAAATTGACGGCGACCG------------TATGTCTATGATG 267
|||||||.||||..||.|||.|.|| |.|||||
BPUM_2291___c 257 CTATTCCGAAAACAGATGGCAATCGATTTTCAGCAACTGTGTCT------ 300
BSNT_03809___ 268 GTTGAGACACCTGAT-AAGGAAAAATGGGCTGCTGCGTATCGCATTCAGT 316
|||..|||| ||.||..| ||.|||...|||..||||||..
BPUM_2291___c 301 ------ACAAGTGATGAACGACTA----GCGGCTTTCTATACCATTCAAA 340
BSNT_03809___ 317 CTGCTGGTGAAAAAGA-ACAGCTGTTATACATAGAACCAGGAATGTCATG 365
|.|...|||||||||| .|| ||...|.||.||||.|||||.|||...||
BPUM_2291___c 341 CAGAGCGTGAAAAAGAGGCA-CTAAAAGACGTAGAGCCAGGTATGAGCTG 389
BSNT_03809___ 366 TGAGTTGACTGGTACATTGGAAG------AACCGAATCACGCAAC----T 405
|.|..||||.||| |||| ..||.||.|||||||| |
BPUM_2291___c 390 TCATATGACAGGT------GAAGTTCGGCCGCCTAAACACGCAACCATTT 433
BSNT_03809___ 406 GTGCCGGGTGCATTTGATTATAACGAGTATCT-TTATC----GGCAGCAT 450
.|..|||| |||.|||||.|..|.|.||| ..||| |||
BPUM_2291___c 434 CTAACGGG----TTTCATTATGATCAATTTCTAAAATCAAAAGGC----- 474
BSNT_03809___ 451 ATTCATTGGAACTACTCTGTCAC----GTCTATTCAAA-ACTGCAGCGAA 495
|||||| .|.|.|.|.|.|| ||| |.||||| ||||.|
BPUM_2291___c 475 ATTCAT----GCCATTTTCTTACCGCAGTC-AATCAAAGACTGTA----- 514
BSNT_03809___ 496 CCTGAAAATTTTAAGTACAAGGTGCTCAGCTTGAGAAAACATATCATATC 545
|..||||| |.|..|| ||| |.||| ||||
BPUM_2291___c 515 -CAAAAAAT-----------GATCGTC--CTT-------CCTAT--TATC 541
BSNT_03809___ 546 ATTCA----------CAAACAGCCTTT--------------------TGC 565
|||| |||| ||..||| |||
BPUM_2291___c 542 -TTCAAAAGATGAGGCAAA-AGGGTTTAAGATTCTTAGAAGATCATGTGC 589
BSNT_03809___ 566 CTCCTG----ATTCGGCAGGGATTGTACAGGCACTTACAGTTGGTGAC-- 609
| | |.||.|.||||||||||||.||.||.|...||||.|||
BPUM_2291___c 590 C----GAAAAACTCTGTAGGGATTGTACAAGCTCTCATTTTTGGAGACCG 635
BSNT_03809___ 610 AGATTTTATGTGGAGGATGAAGTGCTTAC--------CGCGTATCAAAAG 651
.||.||.|| ||| |.||.|| .|..|||||||.|
BPUM_2291___c 636 TGACTTAAT--------TGA--TCCTGACACACTAAGAGACTATCAAATG 675
BSNT_03809___ 652 CTTGGTGTTGTCCATCTCTTGGCAATATCAGGACTCCACGTGGGGATTTT 701
||.||..||.|.|||||.||.||.||.||||||||.||.|||
BPUM_2291___c 676 CTCGGCATTATTCATCTGTTAGCGATCTCAGGACTGCATGTG-------- 717
BSNT_03809___ 702 GACA----------GCAGGTTTGTTTT-ATATCATGATTCGCCTTGGTAT 740
|| ||..||||.|||| .|.|| |..||||...||||.|
BPUM_2291___c 718 --CAAACGCTTCTTGCCTGTTTATTTTGGTGTC-TCCTTCGTGCTGGTGT 764
BSNT_03809___ 741 AACTAGAGA-AAAG-GCGTCAATTCTGTTGCTGTTA---TTTCTGCCGCT 785
.||.||||| |.|| ||||| ||| |.||.||| |||||.||..|
BPUM_2291___c 765 GACAAGAGAGACAGCGCGTC--TTC---TTCTATTATGCTTTCTTCCTGT 809
BSNT_03809___ 786 CTATG--TGATGTTGACCGGCGCTGCTCCTTCAGTGCTACGCGC-CGCTC 832
.|||| || .|||||.||.|||||.||.|||||..||.|.|| .|| |
BPUM_2291___c 810 TTATGCCTG--TTTGACAGGTGCTGCACCATCAGTTTTAAGAGCTTGC-C 856
BSNT_03809___ 833 TCATGTCGGGTGTTTACTTAGCTG----GAAGCCTTGTCAAATG------ 872
|||||.|.||..|.||.|||| || .||||| ||.||||.|
BPUM_2291___c 857 TCATGGCAGGAATCTATTTAG-TGATGACAAGCC-TGCCAAAAGAAATGA 904
BSNT_03809___ 873 ----GCGTGTCCACTCTGC---------AACTGCAA--TTTGTCTTTCAT 907
||.| ||||| ||..|||| |||.|.||
BPUM_2291___c 905 AACAGCCT------TCTGCTGTCGTATTAAGCGCAACGTTTTTATT---- 944
BSNT_03809___ 908 ACATCGTCCTTCT--GCTCTTCAATCCT-TATCATCTCTTTGAAGCCGGT 954
|||.| ||..||| ||||| ||| ||||.|||||...|||.
BPUM_2291___c 945 --------CTTATTAGCGATTC-ATCCTCTAT-ATCTATTTGATATCGGA 984
BSNT_03809___ 955 TTTCAGCTATCGTTCGCCGT--CAGTTTTTCTTTAATT-CTATC------ 995
||||||||.||.||||..|| ||.|||||.| ||| .||||
BPUM_2291___c 985 TTTCAGCTTTCATTCGTGGTAACACTTTTTAT---ATTGTTATCGACCAG 1031
BSNT_03809___ 996 -CTCTTCTATTTTTCAT--CAGGTTAAAACCTCCTTGGGGCAGCTGA--C 1040
.|||| || ||.|..|||| |.|||| ||| |
BPUM_2291___c 1032 AATCTT---------ATCGCAAGCGAAAA--------GCGCAG-TGATGC 1063
BSNT_03809___ 1041 AATTGT-----ATCAC--TCATCGCTCAGCTGGGCTCGCTTCCGATTCTC 1083
|.|||| |||.| |.||.||.||.||.|.|||||||||..||||.
BPUM_2291___c 1064 AGTTGTTCCTGATCTCTTTTATTGCACAACTTGCCTCGCTTCCTGTTCTT 1113
BSNT_03809___ 1084 CTATATCATTTTCATCAGTTTTCTATCATCAGCGTACCGATGAATATGTT 1133
.|||||||||||||.||.||||||.|..|.|||.|.||..||||||||.|
BPUM_2291___c 1114 TTATATCATTTTCAACAATTTTCTTTGCTGAGCATCCCATTGAATATGAT 1163
BSNT_03809___ 1134 GATGGTACCATTTTATAC-------------CTTCTGTATTTTGCCGGGA 1170
..|.||.||.|||||||| |.|||||..||
BPUM_2291___c 1164 ATTTGTCCCTTTTTATACAACAGTTGTCCTGCCTCTGTCCTT-------- 1205
BSNT_03809___ 1171 GCTGTAGCAGGTGTTCTTCTATTAAGTCTTTC------CGTTTCGTTTGG 1214
.||.| ||.||||.|| ||||.|| | ||.||.||||
BPUM_2291___c 1206 ACTCT--------TTTTTCTTTT--GTCTATCATTTATC-TTCCGCTTGG 1244
BSNT_03809___ 1215 GAGATTGTT-TTTCAGCTGGTTTGATTTATTGATAAGCTGGACCAATAGG 1263
...|.|||| ||.||.|| |.||||||...|.|| ||| |
BPUM_2291___c 1245 ACAAATGTTGTTCCAACT-GCTTGATTCGGTCAT--------CCA----G 1281
BSNT_03809___ 1264 CTAA-----------TCA-CAAACATTGCAGATGTTGAAGTGTTCA---C 1298
|||| ||| ||.|.||.||||.|.||||.|.||||| .
BPUM_2291___c 1282 CTAAGTCATCAGTTGTCAGCACATATGGCAGTTTTTGATGGGTTCAATTT 1331
BSNT_03809___ 1299 GA---TTATGA-----------TCGCACATCCT-----------GCACC- 1322
|| |||||| |.|||.||.|| |||||
BPUM_2291___c 1332 GATATTTATGAAATCGACTTGGTGGCATATTCTTCTTGAAGTGAGCACCA 1381
BSNT_03809___ 1323 -TGTTTTGCTTTTTTTATTCACGGTCACGATCATCCTATTGCTTATGG-C 1370
||||||.| |.|||| |||||| .
BPUM_2291___c 1382 TTGTTTTTC------------------------TGCTAT---TTATGGTG 1404
BSNT_03809___ 1371 GATTGAAAAACGCTCCTTGTCGCAGTTGATGGTAACCGGAGGCATTTGCT 1420
||.||.||.| |.|||.|| || ||.| |
BPUM_2291___c 1405 GAGTGCAATA-GTTCCATG--------------AA--------ATCT--T 1429
BSNT_03809___ 1421 GCACGGTGATGTTTCTGCTCTTTATATATCCGTGTCTT-AGT-------- 1461
..|..|||..|.||||| |||..|||..||||||| |||
BPUM_2291___c 1430 ATATCGTGCCGATTCTG----TTACTTATTGGTGTCTTGAGTGTGCACTA 1475
BSNT_03809___ 1462 ------TCCG-------------AAGGAGAAGTGGATATGATAGATATTG 1492
|||| |||||||.||....|||.|.|||.|.|
BPUM_2291___c 1476 TTTCACTCCGAATTTTCTTCAAAAAGGAGAGGTCACGATGCTGGATGTAG 1525
BSNT_03809___ 1493 GACAGGGTGACAGCATGTTTGTAGGT--GCTCCGCATCAGCG---GGGGC 1537
||||.||.||.||..|||||.| | |||| |.|.|.|| |||.|
BPUM_2291___c 1526 GACAAGGGGATAGTTTGTTTAT---TCAGCTC--CCTTACCGAAAGGGAC 1570
BSNT_03809___ 1538 GTGT-CTTAATTGATACCGGCGGC--ACTTTGTCTTACTCGTCAGAGCCT 1584
.|.| ||| .|.||.||.||.||| |||||.|.||..|..| ||.||.
BPUM_2291___c 1571 ATCTACTT-GTGGACACAGGTGGCAGACTTTCTTTTGATGAT--GAACCA 1617
BSNT_03809___ 1585 TGGCGCGAAAAACAGCATCCGT----TTTC-AC--TGGGGGA--AAAGGT 1625
|| ||||||.|| .||| |.|| || |.||.|| ||| .
BPUM_2291___c 1618 TG----GAAAAAAAG---ACGTAAAGTGTCTACGATTGGTGATCAAA--C 1658
BSNT_03809___ 1626 GCTGATTCCGTTTTTAACTGCTAAGGGAAT---CAAACAGCTTGACGCTT 1672
|||.|||||||||||...|.|.||.||.|| .||| |||||.|...
BPUM_2291___c 1659 GCTAATTCCGTTTTTGCATTCAAAAGGTATAGCGAAA---CTTGATGTGC 1705
BSNT_03809___ 1673 TAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAGACTC-- 1720
|.|||||.|||||.||.||||||||.||.||.|||||.|| ||.||
BPUM_2291___c 1706 TGATTCTCACGCATGCAGACCAAGACCACATGGGAGAAGC---GATTCGT 1752
BSNT_03809___ 1721 -TGCTGAAGCATCATAAAGTAAAGCGCCTCGTGATTCCGAAAGGGTTCGT 1769
|..|.||||...|.|||||||||||.||.|..||.||.|||||.|| |
BPUM_2291___c 1753 TTAATCAAGCGAAAGAAAGTAAAGCGGCTGGCTATACCAAAAGGTTT--T 1800
BSNT_03809___ 1770 TTCTGAA--CCTAAAGATGAGAAAGTGCT-------GCAGACAGCCAGAG 1810
..|.||| ||..|.|||||.|||.|||| |||| |.||
BPUM_2291___c 1801 GCCCGAAATCCAGAGGATGAAAAACTGCTAAAAGAAGCAG-----CTGA- 1844
BSNT_03809___ 1811 AAGAGGGA--GTGACAATTGAAGAGGT-GAAGCGAGGCGA---------- 1847
||.||||| ||| |||||.||..| ||| .||||.||
BPUM_2291___c 1845 AAAAGGGATCGTG---ATTGATGAATTAGAA-AGAGGAGACCAGCTCCAA 1890
BSNT_03809___ 1848 --TGTATTGCAAATAAAGGATTTGCAGTTCCATGTACTGTCACC--TGG- 1892
||.|..|||.|| |||||..|||| .||||| |.|
BPUM_2291___c 1891 GTTGGAGAGCACAT-----ATTTGAGGTTC--------TTCACCCTTCGC 1927
BSNT_03809___ 1893 -AGCACCTGATCCGGCAAGCAAAAATAATTCCTCTCTCGTTCT------- 1934
|| ||.||.| |.||||.||.||.|||...||.||.|||||
BPUM_2291___c 1928 AAG-ACATGGT--GACAAGTAAGAACAATGATTCACTTGTTCTATCATTT 1974
BSNT_03809___ 1935 ----GTGGATGGAGACGGGCGGTATGAGCTG--GATCTTGACGGGTGACC 1978
.|||..|||.||||....|||...||| |||||||| ||
BPUM_2291___c 1975 ACTCTTGGCGGGAAACGGTTCCTATTCACTGGAGATCTTGA------AC- 2017
BSNT_03809___ 1979 TGGAGAAAGAAGGGGAACAGGAGGTGATGGACGTGTTTCCAAATATTAAA 2028
|.|||||.||||..||..|.||.||.|..|.|||..|..|...|
BPUM_2291___c 2018 ------ATGAAGGAGAACGAGACATTATAGAAGCCTATCCTCACCTGCGA 2061
BSNT_03809___ 2029 GCAGATGTCTTAAAGGTGGGGCACCATGGGAGCAAAGGCTCTACCGGTGA 2078
|||||||||||||||||.|||||.||||||||||||||.||.||..||||
BPUM_2291___c 2062 GCAGATGTCTTAAAGGTTGGGCATCATGGGAGCAAAGGGTCAACAAGTGA 2111
BSNT_03809___ 2079 AGAATTCATCCAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCCGGGA 2128
.||.|...|.||.||.||..|||||...|..||..|.||.||.||.||..
BPUM_2291___c 2112 TGAGTGGCTTCAGCATCTGAAGCCGTCGATCGCGCTCATTTCGGCTGGTG 2161
BSNT_03809___ 2129 AAAACAATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTACAG 2178
||...|||||.||.||.|||||||||||.||.||..||.||..|.||.||
BPUM_2291___c 2162 AACGGAATCGTTATCAGCATCCTCATCAGGATGTCTTGAAAAAACTAAAG 2211
BSNT_03809___ 2179 AGA-CAT----------TCTATCCGCGTGCTGCGAACAGATCAAAACGGA 2217
|| ||| |.||| ||.|||||.|.|.||||.
BPUM_2291___c 2212 -GATCATCAAACGAAGGTATAT----------CGCACAGACCGAGACGGG 2250
BSNT_03809___ 2218 A---CGATCC----AA--TATAGATACAAAAACAGAGTTGGAACCTTTT- 2257
| .|| || || |||.|| |||.||| |||||.||||
BPUM_2291___c 2251 AGTGTGA-CCTTTGAATTTATTGA-ACAGAAA-------GGAACGTTTTA 2291
BSNT_03809___ 2258 ----CTGTCTATCCTCCATATGAT--------ACATCAGATATAACAGAG 2295
| |||||||||||||| |.|||| ||||
BPUM_2291___c 2292 CACAC-----ATCCTCCATATGATATCTTACAAAATCA---ATAA----- 2328
BSNT_03809___ 2296 ACGAACTAA 2304
BPUM_2291___c 2328 --------- 2328
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.