Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03723 and BPUM_2221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_03723___yqzD.1.24716.seq
# -bsequence dna-align/BPUM_2221___yqzD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03723___yqzD-BPUM_2221___yqzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03723___yqzD-BPUM_2221___yqzD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03723___yqzD
# 2: BPUM_2221___yqzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity: 268/365 (73.4%)
# Similarity: 268/365 (73.4%)
# Gaps: 28/365 ( 7.7%)
# Score: 1031.0
#
#
#=======================================
BSNT_03723___ 1 GTGGAAATTGCTATTATTGCGTTGTTTATCGTCAGTATAGCGCTAATTGC 50
.||||||||||.|||||.|..|||.||.|.||||||||.|..||.||.||
BPUM_2221___y 1 ATGGAAATTGCAATTATCGGATTGCTTGTTGTCAGTATTGTACTGATCGC 50
BSNT_03723___ 51 ATTCTCATATTCTCAAAGAGACCCGATGAAAGATGTAGAACAGGAACTCG 100
|||||||||||.|||||||||.|||||.|||||.||.||.||||||||.|
BPUM_2221___y 51 ATTCTCATATTTTCAAAGAGAGCCGATTAAAGAAGTCGAGCAGGAACTTG 100
BSNT_03723___ 101 AAACACTGCAGCTTTCTGCGATGCAGGAAATTTACAAGCTCAAAAAGAAA 150
|||||||.||.||.|||||.|||||.|||||.||.||.||.|||||||||
BPUM_2221___y 101 AAACACTTCAACTATCTGCAATGCAAGAAATCTATAAACTGAAAAAGAAA 150
BSNT_03723___ 151 ATGACAGTGCTTGAGGAAGAATTACTGGAAACAAACCTTGTCATTCGCAA 200
||||.|||||||||.|||||||||||.|||||||||.|.|||.|||||||
BPUM_2221___y 151 ATGAAAGTGCTTGAAGAAGAATTACTTGAAACAAACATCGTCGTTCGCAA 200
BSNT_03723___ 201 ATCAAAGCAGAGCGACATCAATCAAAAA-----------ATCGCTAAACA 239
| ||.||..||| ||.||.|.|||
BPUM_2221___y 201 A-----------------CATTCTGAAATTGATCCTTCCATTGCAAGACA 233
BSNT_03723___ 240 AATACTTTCTAAATATAATAACGGTATGTCAGCTGAAGCGATTGCTAAAG 289
.||..||||.||..||.|.|||||.|||||..|||||||.|||||....|
BPUM_2221___y 234 GATCATTTCAAAGCATCAAAACGGCATGTCTCCTGAAGCCATTGCGCGCG 283
BSNT_03723___ 290 CTGAGCATGTATCAGTGGAAGACGTGAATACGATTATCAAGGATAATGAG 339
|||||||||||||.||.|||||.||.||||.|||.||.||.||.||.|||
BPUM_2221___y 284 CTGAGCATGTATCTGTAGAAGATGTCAATATGATCATTAAAGACAACGAG 333
BSNT_03723___ 340 AAGGTGCTCGTATGA 354
|.||||||.||||||
BPUM_2221___y 334 AGGGTGCTTGTATGA 348
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