Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03660 and BPUM_2185
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_03660___yqhM.1.24716.seq
# -bsequence dna-align/BPUM_2185.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03660___yqhM-BPUM_2185.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03660___yqhM-BPUM_2185.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03660___yqhM
# 2: BPUM_2185
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity: 635/850 (74.7%)
# Similarity: 635/850 (74.7%)
# Gaps: 26/850 ( 3.1%)
# Score: 2263.5
#
#
#=======================================
BSNT_03660___ 1 ATGCAAAAAGAAACTTGGCGGTTTATAGACTCAGGCAATGCAAG-TCCTG 49
|||||||||||.|..|||.|.||.||.||..||||.||| |||| .||||
BPUM_2185 1 ATGCAAAAAGAGAAATGGTGTTTCATTGATACAGGAAAT-CAAGACCCTG 49
BSNT_03660___ 50 CATTCAATATGGCGCTTGATGAAGC---GCTTTTATATTGGCACAGCGAA 96
|.||.||.|||||..|.|||||||| |||| ||||||||.||.||.
BPUM_2185 50 CCTTTAACATGGCAATGGATGAAGCCTTGCTT---TATTGGCATAGTGAG 96
BSNT_03660___ 97 AAGAAAATCCCCCCGGTTATCCGTTTTTACGGCTGGAATCCGGCGACACT 146
|||...|||||.||.||||||||||||||.||.|||||||||||||||.|
BPUM_2185 97 AAGTTGATCCCGCCTGTTATCCGTTTTTATGGATGGAATCCGGCGACATT 146
BSNT_03660___ 147 TTCTGTAGGGTATTTTCAAAATATTAAAAAGGAAATCAATTTTGAAGCAG 196
.|||||.|||||||||||..||.||.||||.||||||||..|.|||||||
BPUM_2185 147 GTCTGTTGGGTATTTTCAGCATGTTGAAAAAGAAATCAACATGGAAGCAG 196
BSNT_03660___ 197 TACATAAATATAATCTCGGATTCGTCAGACGCCCGACCGGCGGGAGAGGT 246
|..|....|||..|||.|||||.|||.|..|.|||||.||.|||.|.||.
BPUM_2185 197 TCGAGCGCTATGGTCTTGGATTTGTCCGCAGACCGACTGGAGGGCGGGGG 246
BSNT_03660___ 247 GTGCTTCACGATCAGGAACTGACATACAGCGTAATTGTTTCGGAAGAGCA 296
||.|||||.||||||||.|||||.||.|||||.|||||.||.||.||.||
BPUM_2185 247 GTTCTTCATGATCAGGAGCTGACCTATAGCGTGATTGTATCAGAGGAACA 296
BSNT_03660___ 297 CCCCGAGATGCCGGCGACTGTTACTGAGGCTTACCGGGTTATTTCAGAAG 346
.||.||.|||||.|||||.||.||.|||||.|||||.||.||||||||||
BPUM_2185 297 TCCAGAAATGCCAGCGACAGTGACAGAGGCATACCGCGTCATTTCAGAAG 346
BSNT_03660___ 347 GCATACTTCAAGGCTTTAGAAATCTCGGTCTGGACGCTTACTTTGCCATC 396
||||..|..||||.||||.|.|.||.||.||.||.||.||.||||||||.
BPUM_2185 347 GCATTTTAGAAGGTTTTAAAGAACTGGGACTCGATGCGTATTTTGCCATT 396
BSNT_03660___ 397 CCGAGAACTGAAAAAGAAAAAGAAAGCTTAAAAAATCCGCGGTCATCTGT 446
||..|.||.||.||||||||||||||||||||||||||..|.||.|||||
BPUM_2185 397 CCTCGTACAGATAAAGAAAAAGAAAGCTTAAAAAATCCAAGATCGTCTGT 446
BSNT_03660___ 447 TTGTTTTGACGCGCCTTCGTGGTATGAGCTAGTGGTTGAGGGGCGCAAGG 496
.||.|||||.||.|||||.|||||.||.||.||.||.||.||..|.||||
BPUM_2185 447 ATGCTTTGATGCCCCTTCATGGTACGAACTTGTCGTAGAAGGTAGAAAGG 496
BSNT_03660___ 497 TGGCGGGAAGCGCGCAAACGAGACAAAAAGGCGTGATTCTTCAGCATGGC 546
|.||.||.||.||.|||||.|||||||||||.|||||.||.|||||.|||
BPUM_2185 497 TAGCAGGCAGTGCTCAAACAAGACAAAAAGGAGTGATCCTCCAGCACGGC 546
BSNT_03660___ 547 TCCATTCTT-CTTGATTTAGATGAGGACAAGCTGTTCGATCT-GTTCTTA 594
|||| |||| .||||..|.|||||||||||.|||||||||.| .|||||
BPUM_2185 547 TCCA-TCTTAATTGACCTTGATGAGGACAAACTGTTCGATTTATTTCTT- 594
BSNT_03660___ 595 TATCCAAGTGAAAGAGTAAGAGAGCGGATGCAGCGCAATTTCAAAAACAA 644
|||||||..||..|.||.|||||||||||||||.|.|..||.||||||||
BPUM_2185 595 TATCCAAACGACCGTGTGAGAGAGCGGATGCAGAGAAGCTTTAAAAACAA 644
BSNT_03660___ 645 AGCGGTTGCCATTAATGAACTC----ACCGAAAAGCGGGTGACGATGGAT 690
||||||.|||||.||||||.|| |||||| |..|| ||.||.||.
BPUM_2185 645 AGCGGTCGCCATCAATGAAATCTCAGACCGAA---CTTGT-ACAATAGAC 690
BSNT_03660___ 691 GAGGCTCGTAAAGCCTTTAAAGAAGGATTTGAAACAGGTCTTAACATTCA 740
||.||.||....||.||||||..|||||||||||.|||..|.||.|||.|
BPUM_2185 691 GATGCGCGAGTGGCGTTTAAACGAGGATTTGAAAAAGGATTAAATATTGA 740
BSNT_03660___ 741 TTTGGAGCCATATGAACTTTCTCAG--GAAGAGCTTGGTTTTGTTCATCA 788
..|.|.|||.|||||.| ||.||| |||||..|.|..|||||.|||||
BPUM_2185 741 GCTTGTGCCTTATGAGC--TCACAGATGAAGAATTAGCATTTGTCCATCA 788
BSNT_03660___ 789 -CTTGGCTGAAACAAAGTACGCTTCAGATGAATGGAATTATAAGCGGTAA 837
||| ||..||||.||.||.||.|||||.||.||||||||.|||||.|||
BPUM_2185 789 TCTT-GCCAAAACGAAATATGCCTCAGACGAGTGGAATTACAAGCGTTAA 837
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