Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03541 and BPUM_2112
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_03541___namA.1.24716.seq
# -bsequence dna-align/BPUM_2112___yqjM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03541___namA-BPUM_2112___yqjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03541___namA-BPUM_2112___yqjM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03541___namA
# 2: BPUM_2112___yqjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1058
# Identity: 754/1058 (71.3%)
# Similarity: 754/1058 (71.3%)
# Gaps: 82/1058 ( 7.8%)
# Score: 2546.5
#
#
#=======================================
BSNT_03541___ 1 ATGGCCAGAAAATTATTTACACCTATTACAATTAAAGATATGACGTTAAA 50
.|||..|.||||.|.|||.|||||...|||.|.||||.|.|||||.|.||
BPUM_2112___y 1 TTGGAAACAAAACTCTTTTCACCTTGGACATTAAAAGGTGTGACGCTGAA 50
BSNT_03541___ 51 AAACCGCATTGTCATGTCGCCAATGTGCATGTATTCTTCTCATGAAAAGG 100
|||||||||.||.|||||.||.|||||.||||||||.||..||||....|
BPUM_2112___y 51 AAACCGCATCGTGATGTCCCCGATGTGTATGTATTCATCCTATGATCGTG 100
BSNT_03541___ 101 ACGGAAAATTAACA-CCGTTCCACATGGCACATTACATATCGCGCGCAAT 149
|.||.||||| ||| ||.||||||.|..|||||||.||.||.||.||
BPUM_2112___y 101 ATGGGAAATT-ACAGCCTTTCCACTTTACACATTATATTTCCCGTGC--- 146
BSNT_03541___ 150 CGGCC-AGGTC-----GGACTGATTATTGTAGAGGCGTCAG---CGGTTA 190
|| ||||| ||.||.||.||.||.||||| .|| ||.||.
BPUM_2112___y 147 ---CCAAGGTCAAGCTGGGCTAATCATGGTGGAGGC--AAGTGCCGTTTC 191
BSNT_03541___ 191 ACCCTCAAGGACGAATCACTGACCAAGACTTAGGCATTTGGAGCGACGAG 240
|||| .|.|||.||||.|.|||.|||||..|.||.||||||||.||.|||
BPUM_2112___y 192 ACCC-GAGGGAAGAATTAGTGATCAAGATCTCGGGATTTGGAGTGATGAG 240
BSNT_03541___ 241 CATATTGAAGGCTTTGC-----AAAACTGACTGAGCAGGTCAAAGAACAA 285
||.|||||||||||.|| .|||| ||.||..||||||.|.|.
BPUM_2112___y 241 CACATTGAAGGCTTCGCTTCATTAAAC-----GAACAAATCAAAGCATAC 285
BSNT_03541___ 286 GGTTCAAAAATCGGCATTCAGCTTGCCCATGCCGGACGTAAAGCTGAGCT 335
||..|.||.|..|.|||.|||||.||.|||||.||||||||||||||.||
BPUM_2112___y 286 GGAACCAAGACAGCCATCCAGCTGGCTCATGCAGGACGTAAAGCTGAACT 335
BSNT_03541___ 336 TGAAGGAGATATCTTCGCTCCAT-CGGCGATTGCGTTTGACGAACAATCA 384
.||.||.||.|||.|.||.|||| |.|| |||.|.|||||.|||||.||.
BPUM_2112___y 336 AGATGGTGACATCCTGGCACCATCCAGC-ATTCCATTTGATGAACAGTCT 384
BSNT_03541___ 385 GCAACACCTGTAGAAATGTCAGCAGAAAAAGTAAAAGAAACAGTTCAGGA 434
..|||.|||||..|||||||.|..||..||.|.|||||.||.|||||||.
BPUM_2112___y 385 AAAACCCCTGTCCAAATGTCTGTCGATCAAATCAAAGATACCGTTCAGGC 434
BSNT_03541___ 435 GTTCAAGCAAGCGGCTGCCCGCGCAAAAGAAGCCGGCTTTGATGTGATTG 484
|||..||.|.||.||||.|||.||||||.|.|||||||||||..|.||||
BPUM_2112___y 435 GTTTCAGGATGCAGCTGTCCGGGCAAAAAAGGCCGGCTTTGACATCATTG 484
BSNT_03541___ 485 AAATTCATGCGGCGCACGGATATTTAATTCATGAATTTTTGTCTCCGCTT 534
|||||||||.|||.||.||.|||||.|||.||||.|||.|.||.|||||.
BPUM_2112___y 485 AAATTCATGGGGCACATGGCTATTTGATTAATGAGTTTCTTTCACCGCTA 534
BSNT_03541___ 535 TCCAACCATCGCACAGATGAATACGGCGGCTCACCTGAAAACCGCTATCG 584
.|.||.|||||.||||||||.||.|||||.|||||.||.|||||.||.||
BPUM_2112___y 535 GCAAATCATCGAACAGATGATTATGGCGGTTCACCAGAGAACCGTTACCG 584
BSNT_03541___ 585 TTTCTTGAGAGAGATCA-TTG---ATGAAGTCAAACAAGTATGGGACGGT 630
||||||.||||| | ||| |||.||||||..|||||||||||||.
BPUM_2112___y 585 TTTCTTAAGAGA----AGTTGTCAATGCAGTCAATGAAGTATGGGACGGA 630
BSNT_03541___ 631 CCTTTATTTGTCCGTGTATCTGCTTCTGACTACACTGACAAA--GGCTTA 678
||.||||||||||||||.||.|||||||||||||| |||||| |.|||
BPUM_2112___y 631 CCATTATTTGTCCGTGTGTCGGCTTCTGACTACAC-GACAAAAGGACTT- 678
BSNT_03541___ 679 GACATTGCCGATCACATCGGTTTTGCAAAATGGATGAAGGAGCAGGGAGT 728
||||||||||||.|||||||..||||.|.||||.|||||||.||.||.||
BPUM_2112___y 679 GACATTGCCGATTACATCGGCATTGCGACATGGCTGAAGGAACAAGGTGT 728
BSNT_03541___ 729 TGACTTAATTGACTG-CAGCTCAGGCGCCCTTGTTCACGC-AGACATTAA 776
.||||||||.|| || ||||||||||||..|.||.||.|| ||| ||.|.
BPUM_2112___y 729 CGACTTAATCGA-TGTCAGCTCAGGCGCTGTCGTACAGGCGAGA-ATCAG 776
BSNT_03541___ 777 CGTATTCCCTGGCTATCAGGTCAGCTTCGCTGAGAAAATCCGTGAACAGG 826
|..||||||||||||.||.||.|.||||||.||.||||||...|| |||
BPUM_2112___y 777 CACATTCCCTGGCTACCAAGTGACCTTCGCAGAAAAAATCAAAGA--AGG 824
BSNT_03541___ 827 ---CGG-------ACATGGCTACTGGTGCCGTCGGCATGATTACAGACGG 866
||| ||| |||||.|||||..||||.|||...||
BPUM_2112___y 825 TGCCGGTATTCAAACA--------GGTGCTGTCGGACTGATCACATCTGG 866
BSNT_03541___ 867 TTCAATGGCTGAAGAAATTCTGC-AAAACGGACGTGCCGACCTCATCTTT 915
|..|..|||.||.||.|||.|.| |||.|.| |||||.|||.|.||.|||
BPUM_2112___y 867 TGTACAGGCAGAGGAGATTTTACGAAATCAG-CGTGCAGACTTAATTTTT 915
BSNT_03541___ 916 ATCGGCAGAGAGCTTTTGCGGGATCCATTCTTTGCAAGAACTGCTGCGAA 965
|||||||||||..||||.||||||||||.||||.|||.|||.|||||..|
BPUM_2112___y 916 ATCGGCAGAGAATTTTTACGGGATCCATACTTTCCAAAAACAGCTGCTGA 965
BSNT_03541___ 966 ACAGCTCAATACAGAGATTCC------GGCCCCTGTTCAATACGAAAGAG 1009
|.||||...|||| ||| |||||..| ||||||.||..|.|
BPUM_2112___y 966 AGAGCTTCGTACA-----TCCATCGAAGGCCCGCG-TCAATATGACCGCG 1009
BSNT_03541___ 1010 GCTGGTAA 1017
..||||||
BPUM_2112___y 1010 CTTGGTAA 1017
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