Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03322 and BPUM_1962
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03322___yppC.1.24716.seq
# -bsequence dna-align/BPUM_1962___yppC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03322___yppC-BPUM_1962___yppC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03322___yppC-BPUM_1962___yppC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03322___yppC
# 2: BPUM_1962___yppC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity: 662/1051 (63.0%)
# Similarity: 662/1051 (63.0%)
# Gaps: 188/1051 (17.9%)
# Score: 1939.5
#
#
#=======================================
BSNT_03322___ 1 -----GT-GCAAGAACAACAGACCATTAGAAAGCTTCTGAGCCGGATTG- 43
|| .||||||.|.||.|.|||.|...|||.|.| ||||
BPUM_1962___y 1 ATGTTGTCACAAGAAGAGCACATCATCACTCAGCATAT-------ATTGC 43
BSNT_03322___ 44 ----AGCGGCAGACAAAAATAAAAAACGCGGATAACATTTCAAGAACAAA 89
|.||..||..||||||||| ||.|||.|..|.||.|||||
BPUM_1962___y 44 GTGAAACGAAAGTGAAAAATAAA-------GACAACCTGACGAGGACAAA 86
BSNT_03322___ 90 TGCTTATAAAGC-ATTTTACGACCGTCACCCGGAAATCAAATGGTCGCTT 138
|||||| .|||| .|||||.||.|||||.||.||.||.|||||||||||.
BPUM_1962___y 87 TGCTTA-CAAGCGCTTTTATGATCGTCATCCAGAGATGAAATGGTCGCTG 135
BSNT_03322___ 139 TTGGCTTCTTTCGTTTCTCGTAATGCCGGCTGGTCAATGACTGACTTAAA 188
.|.|||||.||.||.||..|.|||||.||.|||||.|||||.||..||||
BPUM_1962___y 136 CTTGCTTCCTTTGTCTCGAGAAATGCTGGATGGTCTATGACGGATCTAAA 185
BSNT_03322___ 189 AGGC-AGTCTGTTTCAGCTTGGACTCCGTGAGAG-----ACAG--CAAGA 230
.||| || ||.||.|| ||| || |||| |||||
BPUM_1962___y 186 GGGCGAG-CTCTTCCA--------TCC-----AGGTTTAACAGATCAAGA 221
BSNT_03322___ 231 ATGG----TTCTTTTT---AGCCTATGAAAGAGCGAACTGGCTTATTTTT 273
..|| || ||||| |||.||||||||||||||.|||||.||.|||
BPUM_1962___y 222 GGGGCACCTT-TTTTTCACAGCATATGAAAGAGCGAATTGGCTGATCTTT 270
BSNT_03322___ 274 TCGGATGCCTATCCGCAGCTTCTACTATACCACTGGTCAAAAAGAGTT-- 321
||.|||||.||.||.||||||||..|.||..|.||||| .|||.|.|
BPUM_1962___y 271 TCAGATGCTTACCCCCAGCTTCTTTTGTATGAATGGTC--TAAGCGGTGC 318
BSNT_03322___ 322 GGGAAACCGCTGTTTCATCTGCTGCATGTGTTTGGC-GTCTCACAATTTA 370
||.|||||..||||.||||||||.| .||.|||..| |||||.|..||||
BPUM_1962___y 319 GGCAAACCTTTGTTCCATCTGCTTC-CGTATTTTTCTGTCTCTCGTTTTA 367
BSNT_03322___ 371 T---------GTCGGAAGAATGGACCCGTTTTTGGCATGAGCGAAATACG 411
| ||.|||| ||||||||||...||||..|.||.
BPUM_1962___y 368 TGAGCACTGAGTGGGAA---------CGTTTTTGGCTAAAGCGTGACACA 408
BSNT_03322___ 412 GAGCGGCTAATGTATGCCCTCATTATAAATGAACAAAACACTATCCAAAC 461
|||||.|||.|.|||||.|||||.||||||||||||.|.|||||.|||.|
BPUM_1962___y 409 GAGCGTCTACTTTATGCACTCATCATAAATGAACAATATACTATACAATC 458
BSNT_03322___ 462 ACCTATTATACAAAATC--CTTCGTTTAAAAAGAATGTTTTTGACACGAT 509
.|||||||||||||||| |||| |.|||||||||||||||.||.||||
BPUM_1962___y 459 TCCTATTATACAAAATCCTCTTC--TGAAAAAGAATGTTTTTCACTCGAT 506
BSNT_03322___ 510 TC-----CTTTTTATTTAAGTGATTGGTTACATTTTAACACCGTTATTTT 554
|| ||.||| ||.||.|||..|||||||.|.||||||.||||
BPUM_1962___y 507 TCAATATCTGTTT-----AGCGAGTGGGGACATTTTCAAACCGTTGTTTT 551
BSNT_03322___ 555 TCCTTCCTCAAATGGGTTTCTTTAC-GGCATTT----CAGTGAA----AC 595
.|| ||.|| ||.|| ||||||| ..||.|| ||
BPUM_1962___y 552 CCC-------AACGG-----TTGACGGGCATTTGTACGGGTTAACCATAC 589
BSNT_03322___ 596 G---CTTTTC-------AAAG-GCGGAGGA----AAGGATAAGGCT-GGG 629
| .||||| |||| |||.|..| |.|||.||..|| |.|
BPUM_1962___y 590 GGAAGTTTTCCAACGTAAAAGAGCGTATTACATTAGGGAAAAAACTAGCG 639
BSNT_03322___ 630 AAAGCAGCTGTCTCAATTGCTGTTCAAGCCAGAATTGTTCTCCTCTTTTT 679
||| |.||| ..|||..||| ||.||.||.||...|||||
BPUM_1962___y 640 AAA----------CTATT--ATTTCGGGCC-GATTTATTTTCGGATTTTT 676
BSNT_03322___ 680 ATCACTTTTTGCACACAGTGCCGCACACAGGTTCCCGTTTTGATATGGAA 729
||||.||||||||.||.||.|||||.||.||.||.||.||||||.|.||.
BPUM_1962___y 677 ATCATTTTTTGCATACTGTTCCGCATACCGGATCACGGTTTGATTTTGAG 726
BSNT_03322___ 730 AAGATGATCGGGATTACAAAAAGAACATCTCCTATGCTAAGGACATG-CT 778
..|.|..|.|||||..|.|.|||..||.|.|||.|.||..|.|| || .|
BPUM_1962___y 727 CCGTTTTTAGGGATCGCTAGAAGGTCAACACCTTTTCTTCGAAC-TGTTT 775
BSNT_03322___ 779 ACCCTGAGTTAATCCACTCATTAGACG--GAACGAAAACAGATTGGTTTC 826
|.||.|.|.|.|..||.|||||||||| .||.||.| |||||||||||
BPUM_1962___y 776 ATCCAGTGATGACACATTCATTAGACGATCAAAGAGA--AGATTGGTTTC 823
BSNT_03322___ 827 ATGGAAAGATAAAGA---AAACGTTCTTTAGGCGCGAGGAA------TTG 867
| |||||.|..|| .|||.||.||| ||.||| ||.
BPUM_1962___y 824 A---AAAGAAATTGAGCCCAACTTTGTTT------GATGAAGAGACGTTA 864
BSNT_03322___ 868 CCGAAGCAGATTGAATTGACAGACTGGTATTTACATAAAAAGCGCCAGCT 917
||.||.||.||||||.||||.|||||||||||.||||||||..|.||||
BPUM_1962___y 865 CCAAAACAAATTGAACTGACCGACTGGTATTTTCATAAAAAAAGACAGC- 913
BSNT_03322___ 918 TCATGCG----CTTTTTGCGGTGGAGCAGTGGC-------TGAAAAAATA 956
|||| |||||..|..|.||||| | ||.|.|||||
BPUM_1962___y 914 ---TGCGTTTTCTTTTCTCATTAGAGCA----CTATTTTTTGCATAAATA 956
BSNT_03322___ 957 A 957
|
BPUM_1962___y 957 A 957
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