Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03263 and BPUM_1923
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_03263___ypgR.1.24716.seq
# -bsequence dna-align/BPUM_1923___ypgR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03263___ypgR-BPUM_1923___ypgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03263___ypgR-BPUM_1923___ypgR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03263___ypgR
# 2: BPUM_1923___ypgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1188
# Identity: 818/1188 (68.9%)
# Similarity: 818/1188 (68.9%)
# Gaps: 105/1188 ( 8.8%)
# Score: 2683.0
#
#
#=======================================
BSNT_03263___ 1 ATGAAGATAAAATCAATTGAACCTACACCAAGCCCGAATACAATGAAAGT 50
|||||.||||.|.|.||.|||||.||.|||||.||.|||||.|||||.||
BPUM_1923___y 1 ATGAAAATAACAGCGATAGAACCGACGCCAAGTCCAAATACGATGAAGGT 50
BSNT_03263___ 51 CATCTTAACGGAAGAGCTT-CCGGCGGGCAAAAGCAATAACTATAAACCT 99
|||.||.||.||||.|||| ||||| ||.||||||||.|||||.|||...
BPUM_1923___y 51 CATTTTGACAGAAGCGCTTGCCGGC-GGTAAAAGCAACAACTACAAAAAG 99
BSNT_03263___ 100 GAGCAAGCAGAAGGCGCACCGCCTGTTATAGAGGA-------AATTCTTA 142
||.|||..|||||..||.|| |.|||.|| .||| |||
BPUM_1923___y 100 GATCAAAAAGAAGAAGCGCC-------AGAGATGATTAAACGTATT-TTA 141
BSNT_03263___ 143 AA-ATAGATGGAGTTAAAGGGGTATATCACGTCGCAGATTTTCTT-GCTG 190
|| ||.||.||.||.|||||.||.|||||.|||||||| |||||| ||.|
BPUM_1923___y 142 AACATTGAAGGTGTAAAAGGTGTTTATCATGTCGCAGA-TTTCTTAGCGG 190
BSNT_03263___ 191 TTGAACGGAATGCAAGATACGACTGGAAAGACATATTACCGCAAGTCCGC 240
||||.||.|||||||..|..||||||.|.|.|||.||.|.|||.|||.|.
BPUM_1923___y 191 TTGAGCGTAATGCAAAGTTTGACTGGCAGGGCATTTTGCAGCAGGTCAGA 240
BSNT_03263___ 241 ACTGCATTTGGGATGGAAAGTGCTGAAAGC-----GGAGAAGAAAATCG- 284
...||.|||||.....||| |.|||.|| ||| |..||||
BPUM_1923___y 241 GAAGCCTTTGGTCAACAAA---CAGAAGGCCTTCAGGA----AGGATCGC 283
BSNT_03263___ 285 -TTCTGATCAAGAATCTTTTGGAGAGGTAAAAGTTTTTGTGCAGATGTTC 333
.||||.|...||..|.|||||.||.||.|||||.|||||.||.|||||.
BPUM_1923___y 284 AGTCTGGTGGTGATACATTTGGCGAAGTCAAAGTGTTTGTCCAAATGTTT 333
BSNT_03263___ 334 AGCGGCATTCCTATGCAAGTTAAATTAACCGATGGAGAGCGGGAAGAACG 383
|..||.|||||.||||||||||||||||||||.||.||..|.|||||.||
BPUM_1923___y 334 AATGGAATTCCGATGCAAGTTAAATTAACCGACGGTGAAAGAGAAGAGCG 383
BSNT_03263___ 384 CTTCGGCTTACCTGAACGCTTTC-AGCAGGCGATCTTAAAACTTAGATCT 432
.||||||.|.|||||||||||.| |||| ||.||.|||| ||.||.
BPUM_1923___y 384 ATTCGGCATGCCTGAACGCTTCCAAGCA-GCTATTTTAA-----AGCTCA 427
BSNT_03263___ 433 GAAGC--TTC---CAATGTTGTGTTTGAGCGGGCTTGGAAAGAACAAGGT 477
||||| ||| ||||||.||.|||||.||.|..|||||||||||.||.
BPUM_1923___y 428 GAAGCAGTTCAGACAATGTCGTATTTGAACGTGTGTGGAAAGAACATGGC 477
BSNT_03263___ 478 GTCAGATTCGGTGACTTTGATGAAATCGGCCATGACGTGACAGAAGAGCT 527
||..|.||.||||||||||..||.||.|||||.||.||.|.|||||||||
BPUM_1923___y 478 GTTCGTTTTGGTGACTTTGCAGATATTGGCCAAGAAGTCAGAGAAGAGCT 527
BSNT_03263___ 528 TCAGGCGGCATACAGTGATGAACG------------GCTGAAACGACTGA 565
.|||||.||.|| |||.| ||| ||| |.|
BPUM_1923___y 528 GCAGGCAGCCTA---TGACG-ACGAGCGTTTAGCCCGCT--------TAA 565
BSNT_03263___ 566 CTGAAGCAGCCGCTCAAGGAAAGGGCGAAGCAAAACAAACTGT------A 609
|.|||| ||.|||| .||||.|.||.||.|||| |
BPUM_1923___y 566 CAGAAG----CGGTCAA--------AGAAGGACAAGAAGCTGTAGATCGA 603
BSNT_03263___ 610 CAG------CGCAAAGCGTATAAAGTAACGCTTGACATGCTGGATGATGA 653
||| ||.||.||.|||.|.|||||....||.||||||...||.||
BPUM_1923___y 604 CAGGTGAACCGAAAGGCATATGATGTAACAGAAGATATGCTGCGCGAGGA 653
BSNT_03263___ 654 GGACTGGAAAAAGCGTTATGCACACTTGGAACAGATGGATCCGAAAGAAG 703
.||||||||||||||||.|||.||.||.||.||.|||.|.||..||.||.
BPUM_1923___y 654 AGACTGGAAAAAGCGTTTTGCCCATTTAGAGCAAATGCAGCCAGAACAAA 703
BSNT_03263___ 704 AGGATATCCCGGTTTTACAGAAGGCATTGGATGATCCAAAGGTGTCCATC 753
||||||||||.||||||..|||.|||.||||.||.||.||....|||||.
BPUM_1923___y 704 AGGATATCCCTGTTTTAATGAAAGCAATGGAAGACCCTAAAACATCCATT 753
BSNT_03263___ 754 AGAAGACAGGCTGTTGTG--TACTTAGGGATGATTGAAACACCTGATGTT 801
.|.||.||.||||||||| |.|| ||.|||||||||...||||.|.||
BPUM_1923___y 754 CGCAGGCAAGCTGTTGTGAATGCT--GGAATGATTGAAGATCCTGCTATT 801
BSNT_03263___ 802 CTTCCTCTATTGTATAAAGCACTTGAGGACAAAGCTGTATCAGTCAGAAG 851
.|.|||.|..|.|||||||..|||.|.||||||.|.||..|||||.|.||
BPUM_1923___y 802 TTGCCTATTCTATATAAAGGGCTTAAAGACAAAACAGTGACAGTCCGCAG 851
BSNT_03263___ 852 AACGGCCGGAGACTGCCTGTCTGATATCGGCGATCCTCAAGCCATTCCCG 901
|||.||.|||||||||.|.||.||..|.||.|||||....||.||....|
BPUM_1923___y 852 AACCGCTGGAGACTGCATTTCAGACCTTGGTGATCCGAGCGCTATAGAAG 901
BSNT_03263___ 902 CTATGATCAAGTCGTTAAGCGACTCC-AGCAAGCTTGTTCGCTGGCGTGC 950
|.|||||..|.||.||||..|| ||| ||.||.|||||||||||||||||
BPUM_1923___y 902 CAATGATTGAATCATTAAAGGA-TCCAAGTAAACTTGTTCGCTGGCGTGC 950
BSNT_03263___ 951 GGCCATGTTCCTGTACGAAGTCGGCGATGAAAGTGCAATTGAAGCTTTGC 1000
.||.|||||.||.||.||||..||.||.||||..|||.||||.||.||..
BPUM_1923___y 951 AGCGATGTTTCTTTATGAAGAAGGTGACGAAACAGCACTTGACGCATTAA 1000
BSNT_03263___ 1001 GCGCTGCCGAAGATGACCCCGAATTTGAGGTCAGCCTTCAAGTCAAAATG 1050
..|..||.||..|.|||||.||||||||.||||||||||||||.||||||
BPUM_1923___y 1001 AAGAAGCTGAGCAAGACCCTGAATTTGAAGTCAGCCTTCAAGTGAAAATG 1050
BSNT_03263___ 1051 GCGCTTGAACGTATTGAGCATGGAGAAGAAGCAAAAGGTTCTGTTTGGAA 1100
||..||||.|||||||||||.|||||||||||.|||||.||.||.|||||
BPUM_1923___y 1051 GCAATTGAGCGTATTGAGCACGGAGAAGAAGCGAAAGGCTCAGTATGGAA 1100
BSNT_03263___ 1101 ACAAATGACGGAAAGCAGAAAAAAAGGC----GAATAA 1134
.||||||||.|||||.|| ||||||.|| ||||.|
BPUM_1923___y 1101 GCAAATGACAGAAAGTAG-AAAAAATGCATCAGAATGA 1137
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