Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01366 and BPUM_1816
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01366___yfiB.1.24716.seq
# -bsequence dna-align/BPUM_1816___yfiB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01366___yfiB-BPUM_1816___yfiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01366___yfiB-BPUM_1816___yfiB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01366___yfiB
# 2: BPUM_1816___yfiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2070
# Identity: 1045/2070 (50.5%)
# Similarity: 1045/2070 (50.5%)
# Gaps: 684/2070 (33.0%)
# Score: 2086.0
#
#
#=======================================
BSNT_01366___ 1 ATGCAA--AAGGCTTTGTCGTTTTTAAAACCATATTCATTGCTGGCGGGA 48
|||.|| || .|||.|||||||||||.||.||| |||..
BPUM_1816___y 1 ATGAAATCAA--TTTTATCGTTTTTAAAGCCTTAT----------CGGCT 38
BSNT_01366___ 49 ATTGCGCTG-----ATTCTTATGTTGACGGAGCTT-----GCAGTTGAAC 88
| |.||.|| |||.|.||..|.|| ||| ||||| .
BPUM_1816___y 39 A-TCCGTTGTGTCCATTGTGATCCTCAC----CTTTTTAAGCAGT----A 79
BSNT_01366___ 89 TGATGCAGCCTTTATTAA-------TT---GCAAAAATCATCGA------ 122
||.|.||| ||.||||.| || |||.|.|||.||||
BPUM_1816___y 80 TGCTCCAG-CTGTATTTACCGACGCTTACGGCAGATATCGTCGATGTCGG 128
BSNT_01366___ 123 -------CGATGGGATATTG-------AAGCAAGATCTGCGGCATGTATG 158
|.|.|.||||||| |.|.|||.|..||||| ||
BPUM_1816___y 129 GATCGTCCAAGGAGATATTGCTTACATATGGAAGGTTGGCGGC-----TG 173
BSNT_01366___ 159 GATATGG-GGC-------------GC------GGTCATGATCGGG----C 184
| |||| ||| || |.|||.||||.|| |
BPUM_1816___y 174 G--ATGGTGGCTTGTTCTCTACTTGCCATCTTGCTCACGATCTGGAAATC 221
BSNT_01366___ 185 TGACCGTGTTATC----------CTTTGCGGCGGG---GAT--------- 212
|.| |.|||.||| |||.||..|||| |||
BPUM_1816___y 222 TTA-CTTGTCATCAAAGACTGCACTTGGCTTCGGGCGTGATATGAGAAGA 270
BSNT_01366___ 213 --GCTGAATTCCTTTTATGCCGCCCATGTCAGCCAAAGCTTTTCCTATGA 260
||| ||||.|| ||||||...||| |||||
BPUM_1816___y 271 CAGCT-------TTTTGTG-----CATGTCGAACAA---TTTTC------ 299
BSNT_01366___ 261 TACGAGAA-AAGGGCTTTTTCAAAAAATCCAGTCCTTCTCCTATTCCACA 309
||.|||| || ||||||||||||
BPUM_1816___y 300 -ACTAGAAGAA------TTTCAAAAAATC--------------------- 321
BSNT_01366___ 310 TTTGGACAGTTTTCGTCCTCTTCTTATATTACAAGGCTGACAAACGACGT 359
|.|| |.|||||.|.|||||||||...||||||.||.||
BPUM_1816___y 322 ----GGCA--------CGTCTTCCTTTATTACAAGATCGACAAATGATGT 359
BSNT_01366___ 360 CACACAGGTTCAAAATATGATTTTTATGAGTTTGCGGTTTATGCTGCGGG 409
.|.|||.||.|||.||.|.|...|.||||.|||.|...|.|||..|.|.|
BPUM_1816___y 360 GAAACAAGTCCAAGATGTTACGATCATGATTTTACAAATGATGACGAGAG 409
BSNT_01366___ 410 CTCCCTTAATGATTGCAGGCGGCATTGT----GCTGTCGC-----TTGCC 450
|.||..|.|||.|||..|||||.|||.| |||||..| .|||.
BPUM_1816___y 410 CCCCGCTCATGCTTGTGGGCGGAATTATTTTGGCTGTATCCCGAGATGCT 459
BSNT_01366___ 451 GT--TAATGTGAAACTCGGCTTTTTTCTGCTTGTGA----CCATTCCGAT 494
|| | ||.| |||..|||||| | ||.||||
BPUM_1816___y 460 GTCCT-ATCT----CTCATCTTTTT----------AGCAGCCCTTCC--- 491
BSNT_01366___ 495 CCTGATCTTG-----TTTTTGCTA-TGGGTATTAAGGAAAGGCGGGGCAC 538
||| ||||| |||.| ||| |..||||..| ||||||| ||
BPUM_1816___y 492 CCT--TCTTGGCGGATTTAT-CTATTTAGTATCGA-GAAAGGC----CA- 532
BSNT_01366___ 539 TGTTCCGC-------TCAG-TGCAGAAAAGGCTGGATCAAGTGAACACCA 580
|||||| |||| |.|||||||.....||.|.|.||||....|
BPUM_1816___y 533 --TTCCGCTCTTCGGTCAGCTTCAGAAAAAAACAGACCGACTGAATTTAA 580
BSNT_01366___ 581 TCATGC-AGGAAAATTTAATCGCAATCAAGCTGATCAAAGCG-------- 621
|.|||| || ||||.|..|||.|| ||| ||
BPUM_1816___y 581 TTATGCGAG--------AATCTCTTTCAGGC--ATC----CGGGTCATTC 616
BSNT_01366___ 622 CTGCTT-----CGCGGCAGCCACGAAGTCA---AACGATTTATCA--AAG 661
.||||| || .|.|| |.||.|..| |||| ||.||| |||
BPUM_1816___y 617 GTGCTTTTAACCG-TGTAG--ATGATGAAAAGGAACG--TTTTCAAGAAG 661
BSNT_01366___ 662 CCAAC-------ACAAGGCTGATGGAAAAAACGGTTTCGGCCTTTCAGCT 704
||||| |||||| |.||| ||||||..||.|
BPUM_1816___y 662 CCAACACATCCTACAAGG----------ATACG-----GGCCTTAGAGTT 696
BSNT_01366___ 705 TGTGGAA---TTCACGATGCCTGTACTGATGCTT---TTGATG------- 741
|| ||.| |||.|| |||| ||.|| ||.|||
BPUM_1816___y 697 -----AACCGTTTA--ATGGCT-TACT--TGTTTCCATTTATGCTCATCA 736
BSNT_01366___ 742 --------------AATCTCTGTATCCTTTTGATTTTGTGGGCGGGGT-C 776
|||.||.|.|||.|.| |||..||| |
BPUM_1816___y 737 TCATGAACTTCACAAATATCGGCATCGTCT----------GGCTTGGTGC 776
BSNT_01366___ 777 CTACAGTATTACGA-GCGGAAGCACTCAG------GTTGGCGATGTTGTT 819
..||.|.||| || ||.|.|| || |||||..||.|..||
BPUM_1816___y 777 AAACCGAATT--GATGCCGGAG-----AGATGGAAGTTGGGAATCTGATT 819
BSNT_01366___ 820 GCGATAATTAACTACGCAA---------------CACGAATTACAGGCGC 854
||..|.||..|.||.||.| |||..|||| .
BPUM_1816___y 820 GCCTTTATCCAATATGCGATGATGATTTTAATGGCACTGATTA------T 863
BSNT_01366___ 855 GCTTTCGATGTTTCCGTTTTTGATTATGATTTTCACC-AGGGCGAAGGCT 903
|||.||.||| .||||| ||||||.|| || ||.||..|.||.
BPUM_1816___y 864 GCTGTCAATG----AGTTTT--ATTATGGTT----CCAAGAGCACAAGCA 903
BSNT_01366___ 904 TCAG-----GGGATAGAATCGGTGAGGTGCTTGAAACA------------ 936
|||| .|.|| ||| .||.||| |.|||||
BPUM_1816___y 904 TCAGCTAAACGCAT-GAA----CGAAGTG--TTAAACATGGAACCAAAAA 946
BSNT_01366___ 937 --GAAGGCGACGAGCGGGAGGAA-GGCATCATATT--TGA---TCGTTTG 978
.|||.|.|.|| ||||| || || ||| .|||..|
BPUM_1816___y 947 TTCAAGACAATGA-----AGGAACGG-------TTACTGACCTGCGTGCG 984
BSNT_01366___ 979 TCAGGACA---GATTGAGTTTCAGCATGTATCCTTTCGCTA-TCCTGAAA 1024
.|.|.||| .|||...|||.||.||||.||.||| || |.||.|||
BPUM_1816___y 985 CCCGCACAATCCATTCGCTTTGAGGATGTGTCATTT---TATTACTCAAA 1031
BSNT_01366___ 1025 TGGACAGAGAA----GC-GCTCAGGAATGTCTCATTTTCCGCAAAGCCAA 1069
|| |.||.|| || |.|||.| ||.|..||||| .|||||||
BPUM_1816___y 1032 TG--CGGAAAAATCGGCGGTTCAAG-ATATTACATTT-----GAAGCCAA 1073
BSNT_01366___ 1070 -----GAGAAACGATCGCGATTCTCGGTGCGACGGGCTCGGGCAAGTCCA 1114
|.|||||||..||.|||.||||....||.||.||.||.||..|||
BPUM_1816___y 1074 AACTGGCGAAACGACAGCTATTATCGGCAGTACAGGTTCAGGGAAAACCA 1123
BSNT_01366___ 1115 CGCTTTTTCAGCTCATCCCGCGGCTTTATC--AGC--CGGATTCAGGCCG 1160
|.|||.|.|||||.||..||||..|||| | ||| |.|| ||||||
BPUM_1816___y 1124 CCCTTCTCCAGCTAATGACGCGATTTTA-CGAAGCGACAGA---AGGCCG 1169
BSNT_01366___ 1161 CATTTACA-TAGATGAAAAGCCGGTTCA------AGATATTCCGGCTGAA 1203
.| ||||| |.||| |||..| |||.||| .|.||.|.
BPUM_1816___y 1170 GA-TTACACTTGAT--------GGTGTAGACATTAGAGATT-TGCCTCAG 1209
BSNT_01366___ 1204 GGG---CTGCGCAGGCAAATTGGATATGTACCGCA--------------- 1235
|.| |||.|.||.||.||.||.|||||..|.||
BPUM_1816___y 1210 GAGAAACTGAGAAGCCAGATGGGCTATGTTTCTCAAAAAGCGGTTTTATT 1259
BSNT_01366___ 1236 ----GGAAGTCC--------TCTTGT----TTTCCGGCA---------CA 1260
|||| || |..||| ||| |||| ||
BPUM_1816___y 1260 TAGTGGAA--CCATTGCCGATAATGTGCGATTT--GGCAGACAGGATGCA 1305
BSNT_01366___ 1261 ATCAAAGAAAA-------------CATCGCTTGGGGCA-----AAGAAAA 1292
|.|.|.|||.| |.||||..||.||| |||||..
BPUM_1816___y 1306 AGCGATGAAGATGTTTGGCAGGCGCTTCGCACGGCGCAGGCAGAAGAATT 1355
BSNT_01366___ 1293 TGCTTCACTAGATGAAATAATGGAT-GCGGCCAAAC-ATGCGCAAATTCA 1340
||.|| ||.||.|| ||| ||||| |.| |||||.|||||.|
BPUM_1816___y 1356 TGTTT-------TGCAAAAA--GATGGCGGC--ATCGATGCGGAAATTGA 1394
BSNT_01366___ 1341 TGAAACGATTTTGAAGCTCCCA-AATGGATATGACACAGTTTTGGGGCAA 1389
||| ..|||||
BPUM_1816___y 1395 -------------------CCAGGGTGGAT-------------------- 1405
BSNT_01366___ 1390 AGAGGCGTCAACCTGTCCGGCGGCCAAAAACAGCGAATTTCCATTGCGCG 1439
|| ||.||.||.|||||.|||||.||.||..||||.|||||..|
BPUM_1816___y 1406 -----CG--AATCTATCTGGCGGTCAAAAGCAACGTCTTTCTATTGCAAG 1448
BSNT_01366___ 1440 GGCACTGATTCGAAAACCGGCTATCCT-TCTATTAGATGACAG---CACA 1485
.||.|||.|..||||.|||.| ||.|| |||.||.||.||.|| |.||
BPUM_1816___y 1449 AGCGCTGGTGAGAAAGCCGTC-ATTCTATCTGTTTGACGATAGTTTCTCA 1497
BSNT_01366___ 1486 AGCGCGCTTGATCTGCAAACGGAGGCGAAGCTGC---------TTGAAGC 1526
||.||||||....||||.||.||.|||||.| |.|||||
BPUM_1816___y 1498 ---GCACTTGATTATAAAACAGATGCAAAGCTTCGGGCATCATTAGAAGC 1544
BSNT_01366___ 1527 --AATCAGCACATACCATTGCACAACTTTGATCATT---ACACAAAAAAT 1571
||..|||||||.| || ||.|.|||||| .|.||||.|||
BPUM_1816___y 1545 CGAAAAAGCACATGC---TG-----CTCTCATCATTGTGGCGCAAAGAAT 1586
BSNT_01366___ 1572 AACCACGGCGATGAAAGC----TGATCAGATTTTGCTGCTTGAGGACGGC 1617
.|.|||.|.| |||| ||||.|.||..|..|.||.||.||.||.
BPUM_1816___y 1587 TAGCACAGTG----AAGCATAGTGATAAAATCATCGTACTAGATGAAGGG 1632
BSNT_01366___ 1618 GAACTGATTGAA---AAAGGCACTCATAGTGAGCTGCTTTCTG------C 1658
.|| ||||.| |..||.||.|| |||.| ..||.||| .
BPUM_1816___y 1633 AAA---ATTGCAGGTATCGGAACGCA---TGAAC-AATTACTGAAGGACA 1675
BSNT_01366___ 1659 ATCTCAGT-TATACAAGCGCATTTACGAGTCACAATTCGGAAG----GGA 1703
|||| .|| ||| ||||.| |||...|..||||| ||||| |||
BPUM_1816___y 1676 ATCT-TGTCTAT-CAAGAG-ATTGTGGCATCACA----GGAAGGTCAGGA 1718
BSNT_01366___ 1704 GG-GGAGCGAGTCATGCTAA 1722
|| |||||||| .|||.
BPUM_1816___y 1719 GGTGGAGCGAG-GATGA--- 1734
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