Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02235 and BPUM_1222
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_02235___ykoJ.1.24716.seq
# -bsequence dna-align/BPUM_1222___ykoJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02235___ykoJ-BPUM_1222___ykoJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02235___ykoJ-BPUM_1222___ykoJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02235___ykoJ
# 2: BPUM_1222___ykoJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity: 340/579 (58.7%)
# Similarity: 340/579 (58.7%)
# Gaps: 126/579 (21.8%)
# Score: 814.5
#
#
#=======================================
BSNT_02235___ 1 ATGCTCAAGAAAAAATGGA-TGGTCGGTCT-----TTTAGCAGGATGCCT 44
||| |.||||||| |.| |.||.| || .|||.|||||...||
BPUM_1222___y 1 ATG---ATGAAAAAA-GTACTAGTAG--CTACAGCATTAACAGGAACTCT 44
BSNT_02235___ 45 AGCGGCCGGAGGATTCA-GCTACAACGCGTTTGC-CAAAGAAAACAATGA 92
.|..||.||.||.|||| .||.||| || ||| ||.||||...
BPUM_1222___y 45 TGTCGCAGGTGGTTTCACACTTCAA-------GCTCAA--AATACAAATC 85
BSNT_02235___ 93 AAACAG-ACAGGCTTCTTCTAAGACGGA--------TGCA---------- 123
|||||| |||.| |||| ||||
BPUM_1222___y 86 AAACAGCACACG------------CGGAGCAAGTGGTGCAAAAGAAATCT 123
BSNT_02235___ 124 --------CTCACTG-AACAAGAAGCAGAAGCAATTG--CTAAAACAGTT 162
||||..| ||||||.||.|.||||| | ||||| |||.
BPUM_1222___y 124 TCGTTTGTCTCAAAGAAACAAGCAGAAAAAGCA---GCCCTAAA--AGTG 168
BSNT_02235___ 163 GTTGACGGCACAGTAGAAGACATTGACAGAGACCTTTACAACGGCAAAGA 212
||..|.||....|||||.||..|.||....||.|.|.|.||.||.|||..
BPUM_1222___y 169 GTGAAAGGGTATGTAGATGATGTGGATCTTGAGCGTAAAAAAGGAAAATG 218
BSNT_02235___ 213 AGTCTATGAAGTGGAGATTGAAAAAGAAGG---TGAAGACTACGACGTTT 259
.||.|||||.||.||||||.||||||..|| |||| ||..|.||.|
BPUM_1222___y 219 GGTGTATGAGGTCGAGATTAAAAAAGGCGGCTTTGAA---TATAAAGTAT 265
BSNT_02235___ 260 ATGTAGATATTCATACAAAACAAGCGCTTAATGACCCGCTAAAGGAGAAA 309
||||.|||..|.|..||..|.|||||||.|||||.|||.|.|| |||||
BPUM_1222___y 266 ATGTCGATGCTAAATCAGGAAAAGCGCTGAATGATCCGGTCAA--AGAAA 313
BSNT_02235___ 310 GCAG-AACAA---GTCGCCATAACCAAAGAAG-AAGCTGAAGAAATTGCT 354
|| ||||| ||....||.||.||| ||| ||||||||.||||||||
BPUM_1222___y 314 --AGAAACAAAATGTGAAAATCACTAAA-AAGCAAGCTGAACAAATTGCT 360
BSNT_02235___ 355 TT----AAAGCAAACAGGCGGAACCGTAACAGA----AAGTAAGCTTGAC 396
.| ||||.||| .||.||.||.||||| .|.|.|| .|.|.
BPUM_1222___y 361 CTTGCAAAAGTAAA----AGGGACAGTCACAGATTCTGATTTAG-ATAAA 405
BSNT_02235___ 397 GAAGATGACG-GTGCTTACATCTATGAAATGGAAAT--CCAAACGAAA-- 441
|||.|||.|| ||.|||| ||||||.|.||||| |||.||.|||
BPUM_1222___y 406 GAAAATGGCGTGTACTTA----TATGAAGTCGAAATCACCACACCAAACG 451
BSNT_02235___ 442 -CAAGGAACTGAGACAGAATTTGAAATTTCCGCAAAAGATGGAC--GCAT 488
|.|||||.| .||.|||||.||||||||.||| || |||.
BPUM_1222___y 452 GCGAGGAAGT-----TGATTTTGAGATTTCCGCTAAA-----ACAGGCAA 491
BSNT_02235___ 489 TATC---AAACAGGAGAT-AGATGACTAA 513
.||| ||.||.|| || .|||||.|||
BPUM_1222___y 492 AATCCTAAAGCAAGA-ATGGGATGATTAA 519
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