Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02210 and BPUM_1212
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_02210___ykmA.1.24716.seq
# -bsequence dna-align/BPUM_1212___ohrR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02210___ykmA-BPUM_1212___ohrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02210___ykmA-BPUM_1212___ohrR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02210___ykmA
# 2: BPUM_1212___ohrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity: 302/476 (63.4%)
# Similarity: 302/476 (63.4%)
# Gaps: 61/476 (12.8%)
# Score: 894.5
#
#
#=======================================
BSNT_02210___ 1 ATGGAAAATAAATTTGATCATATGAAATTGGAGAATCAGCTTTGTTTTTT 50
|||..||||.||||.||.||||||||..||||.||||||||||||||.||
BPUM_1212___o 1 ATGACAAATGAATTCGAACATATGAAGCTGGAAAATCAGCTTTGTTTCTT 50
BSNT_02210___ 51 GCTATATGCGAGTTCGCGGGAAATGATAAAGCAATACAAGCCTCTGCTTG 100
|.|||||||.|||||..|.||.||||..|||||.||.||.||..|..|.|
BPUM_1212___o 51 GTTATATGCAAGTTCAAGAGAGATGACGAAGCAGTATAAACCGTTATTAG 100
BSNT_02210___ 101 ATAAGCTGAATATAACATACCCCCAATATTTGGCTTTGCTTTTGTTATGG 150
|..||.|..|.||.||.||.||.|||||||||||..|||||||.||.|||
BPUM_1212___o 101 AAGAGTTAGACATTACGTATCCGCAATATTTGGCACTGCTTTTATTGTGG 150
BSNT_02210___ 151 GAACACGAAACGCTTACTGTCAAAAAAATGGGCGAACAGCTGTATTTAGA 200
||.||.|.||...|.|.|||.||||..|||||.||||...|.||||||||
BPUM_1212___o 151 GAGCATGGAAAATTAAATGTGAAAACGATGGGAGAACTTTTATATTTAGA 200
BSNT_02210___ 201 TTCAGGAACGCTCACTCCTATGCTTAAACGAATGGAACAACAGGGTTTGA 250
.||.||.||.|||||.||||||||.|||||.|||||.|||.|.|||.|.|
BPUM_1212___o 201 CTCCGGTACACTCACACCTATGCTGAAACGGATGGAGCAAAACGGTCTCA 250
BSNT_02210___ 251 TTA----CGAGAAAAAGATCAGAAGAGGATGAGCGGTCCGTGTTGATCAG 296
|.| |||| .|.||..||||||||||.||.||.|||...||..|
BPUM_1212___o 251 TCATCCGCGAG----CGCTCGAAAGAGGATGAACGTTCTGTGCAAATTCG 296
BSNT_02210___ 297 CCTGACAGAGGACGGAGCGTTATTAAAGGATAAAGCGGTTGACATTC--- 343
..|.||.||..|.||.|.|..|.||||.||.||.||...||.|||||
BPUM_1212___o 297 TTTAACGGAATATGGCGAGCAACTAAAAGAGAAGGCTACTGCCATTCCAT 346
BSNT_02210___ 344 --CAGAGACAATTCTGGGGCTCTCAAAGCAG-TCTGGGGAGGATCTCAAA 390
||||..| .|||||||.| |.|||| || ||| |.||
BPUM_1212___o 347 TTCAGATGC-TTTCTGGGAC-----AGGCAGATC------GGA---CGAA 381
BSNT_02210___ 391 CAGTTAAAATC------CGC-TCTATATACATTGCTGGA----------- 422
.||||||||.| ||| ||| ||||..||
BPUM_1212___o 382 GAGTTAAAAACATTGCGCGCGTCT-------TTGCATGAGCTTTTGCAAA 424
BSNT_02210___ 423 ----AACACTTCATCAAAAAAATTGA 444
||||| .||| ||||...|||
BPUM_1212___o 425 AATTAACAC--AATC-AAAAGGCTGA 447
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