Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02176 and BPUM_1180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_02176___ykcA.1.24716.seq
# -bsequence dna-align/BPUM_1180___gloA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02176___ykcA-BPUM_1180___gloA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02176___ykcA-BPUM_1180___gloA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02176___ykcA
# 2: BPUM_1180___gloA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1033
# Identity: 648/1033 (62.7%)
# Similarity: 648/1033 (62.7%)
# Gaps: 158/1033 (15.3%)
# Score: 1882.5
#
#
#=======================================
BSNT_02176___ 1 ATGAAAGTTAACGGCATTCACCACGTATCGGCATTAACGGCCGACGCACA 50
||||||.|.||.||.||||||||||||||.||||||||.|||.|.||.||
BPUM_1180___g 1 ATGAAAATCAATGGGATTCACCACGTATCTGCATTAACAGCCAATGCTCA 50
BSNT_02176___ 51 AAAAAACTTGGATTTCTA---TAAGAAAGTATTAGGATTAAAGCTCGTCA 97
||||||..|.|||||||| ..||| |..|.||.|||||.||.||||
BPUM_1180___g 51 AAAAAATGTTGATTTCTACCGCCAGA---TTCTTGGCTTAAAACTTGTCA 97
BSNT_02176___ 98 AAAAATCCGTCAATCAGGATGAACCGACCATGTACCATCTGTTCTACGGA 147
|||||.|.||||||||||||||.||..|.|||||.||..|.||.||.|||
BPUM_1180___g 98 AAAAAACAGTCAATCAGGATGATCCATCAATGTATCACTTATTTTATGGA 147
BSNT_02176___ 148 GATGAAGTGGCAAACCCGGGAACTGAGCTGACGTTTTTCGAGATTCCCCG 197
|||||.||.||....||||||||.|||||.||.||.||.||.||||
BPUM_1180___g 148 GATGAGGTCGCTTCACCGGGAACGGAGCTCACCTTCTTTGAAATTC---- 193
BSNT_02176___ 198 CATTGCAC------CGTTTCATGCAGGAACAAACAGTATTTCTTCTATTG 241
||.|||.| |||||.| .||||||||||
BPUM_1180___g 194 CAATGCTCGCTCGTCGTTTGA--AAGGAACAAAC---------------- 225
BSNT_02176___ 242 GTTTGCGCGTCCCAAGCAC---------------------AGAAGCCCT- 269
|| |.||.||||||| ||||||.||
BPUM_1180___g 226 ----GC-CATCACAAGCACAGGCCTTCTCGTTTCTTCTGAAGAAGCACTC 270
BSNT_02176___ 270 GCATTACTGGAAAGAACGTTTTGAAGA---------GCAGCAAGTAACGC 310
.|||| .|||.||.|.||||||||||| ||||||||.||
BPUM_1180___g 271 TCATT-TTGGGAAAAGCGTTTTGAAGAGACAGGCGTGCAGCAAGAAA--- 316
BSNT_02176___ 311 ACAGCGGCAT-CTCCAAAAGAGCCGGACGTGACATAATGGC-ATTTCAAG 358
||||.| ||..|.|.|.|.|.|||.||.| |.|| .|||||||
BPUM_1180___g 317 ----CGGCTTCCTTGAGAGGGGGCAGACCTGCC----TTGCGTTTTCAAG 358
BSNT_02176___ 359 ATCATGAAGGGCAGCGACTTGTGCTGACTGCTGATGAGGAAGGAAAAGGA 408
|||..||||||||.|.|||..|..|.||.|..||...||..|.|.|||.|
BPUM_1180___g 359 ATCCAGAAGGGCAACAACTATTTTTAACAGTAGAACCGGCCGCACAAGAA 408
BSNT_02176___ 409 TATGGC---CTGCCTGTTAAACA-GAGCGGCATTCCGGAAGAATTTTCGT 454
...||| |.|||.|| ||| || .|..|||||.|.|||.|||||..
BPUM_1180___g 409 GCAGGCTCACCGCCAGT---ACATGA-TGATATTCCAGCAGAGTTTTCCA 454
BSNT_02176___ 455 TTCGCGGGTTAGGGCCGGTTGAACTGACTGTGCCATATGCTGAACCAACT 504
||.|.||.||.|||||.||||||.|.||.||..||.|.||.||...|||.
BPUM_1180___g 455 TTAGAGGTTTGGGGCCAGTTGAATTAACGGTTGCAGAAGCGGACAAAACG 504
BSNT_02176___ 505 TTACACGTATTGACGAATATTCTTGGATTTACAGAAATCAGC-CGTGAAC 553
.|.|..||.||.|||.|.||.|||||.||.||.||.| .||| ||||||
BPUM_1180___g 505 ATTCGTGTTTTAACGGACATCCTTGGCTTCACGGAGA-GAGCGCGTGAA- 552
BSNT_02176___ 554 CAGTCGAAGGGCAAGG---------AACCGCCGTTATTCTGGAATCAGGA 594
||.||.||.| |.|| .||| |||.|.||.||||||
BPUM_1180___g 553 CAATCAAATG--ATGGTGAGATCGTGACC------ATTTTTGAGTCAGGA 594
BSNT_02176___ 595 GAAGGCGGTGCTGCAACGGAAATCCATTTAATAGAAAGAAAC-----GAT 639
.|.||.|||||||.|||.|||||.|||.|.||.|||| |||| ||.
BPUM_1180___g 595 AATGGTGGTGCTGGAACAGAAATTCATGTGATCGAAA-AAACGGAAGGAC 643
BSNT_02176___ 640 CTTCCGCGCGAGCGTCAAGGCAAAGGGAGTGTTCACCACGTCGCATTTCG 689
|||| .||.|||..|||||.|||.|||||.||.|||||.||.|||||
BPUM_1180___g 644 CTTC----TGAACGTTCAGGCAGAGGAAGTGTGCATCACGTAGCTTTTCG 689
BSNT_02176___ 690 GGT--AAGA----GATGAA---GAAGAACTTGCCGGGTGGCACCGGATCA 730
.|| ||.| ||.||| |||.|| || |..||.||....||||
BPUM_1180___g 690 TGTGGAAAATGCTGAGGAATTGGAAAAA--TG--GTATGACAAAATATCA 735
BSNT_02176___ 731 TCAGCCGCGAAGGCTTTAGCAATTCCGGCATTGTGGAGCGCTACTATTTC 780
..||| |||.||.|..||.||.||..|||||||.||.|.|||.||.
BPUM_1180___g 736 AAAGC-----AGGATTCACGAACTCTGGTGTTGTGGAACGTTTCTACTTT 780
BSNT_02176___ 781 AAGGCGCTGTATTTCAGAGAACCGAACGGCATTTTGTTCGAGTTATCAAC 830
||.||.||.||.||.|||||.||.||.||.|||||.||.||..|.|||||
BPUM_1180___g 781 AAAGCCCTTTACTTTAGAGAGCCTAATGGTATTTTATTTGAAATCTCAAC 830
BSNT_02176___ 831 GGACGGACCGGGCTTTATGGTAGATGAAAATCTTGATGAGCTTGGCCAAA 880
.|||||.||.||.||||..||.||.|||....|.|||||||||||
BPUM_1180___g 831 AGACGGTCCTGGGTTTACAGTGGACGAAGGAGTGGATGAGCTTGG----- 875
BSNT_02176___ 881 CGATC-----GCTCTTCCGCCGTATCTTGAGCATCGAA-GAGCAGAAATT 924
||||| ||||||||.||.|.|||.||||| |.|| ||||||||||.
BPUM_1180___g 876 CGATCAATTAGCTCTTCCTCCATTTCTAGAGCA-CAAACGAGCAGAAATA 924
BSNT_02176___ 925 GAAGCGAAATTGAAACCGATCCA------ATAA 951
|||..||.|||.|.|||.||.|| ||||
BPUM_1180___g 925 GAACAGAGATTAACACCCATTCAGTCATCATAA 957
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