Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01967 and BPUM_1108
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01967___cotV.1.24716.seq
# -bsequence dna-align/BPUM_1108___cotV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01967___cotV-BPUM_1108___cotV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01967___cotV-BPUM_1108___cotV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01967___cotV
# 2: BPUM_1108___cotV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 444
# Identity: 245/444 (55.2%)
# Similarity: 245/444 (55.2%)
# Gaps: 105/444 (23.6%)
# Score: 621.0
#
#
#=======================================
BSNT_01967___ 1 ---------ATGTCTGTCCAAGAAAATGTTGACACACTCTACTCAAAAAT 41
.|||||.|..||||||.||.|||...|.|.|||.||.||.|
BPUM_1108___c 1 GTGAAAGTATTGTCTATTGAAGAAAGTGCTGATTTATTATACACACAACT 50
BSNT_01967___ 42 GTTTAAAGAACTGGCTGAA-----GAACATGATAATTATATAGAAATTAT 86
|||.||.||| |.|| .|..|||||.|||..||.||.||.|.
BPUM_1108___c 51 GTTAAACGAA-----TTAATCAGCAATTATGATGATTTCATTGAGATCAA 95
BSNT_01967___ 87 TGATTCTGAAAAGATTACGATTCATAAATCAGACACCACATTTGCACTTT 136
.|||||.|||||..|.||||||||||||.||||....|||...|||||.|
BPUM_1108___c 96 AGATTCCGAAAATGTCACGATTCATAAAACAGATGTAACAGCCGCACTCT 145
BSNT_01967___ 137 CATTGCAATCAGCAGTTTCAGCTTTAATCACTGTTACAACCCAGCTTCTT 186
|..|.|||.|..|.||..|..|..|.||.|||.||..||.|||.|||||
BPUM_1108___c 146 CCCTTCAAGCGACCGTAACGACAATCATTACTCTTTTAATCCAACTTCT- 194
BSNT_01967___ 187 ATCAGCGATAGCGATATAGCAGACATTGTTGCGAGTGATCTGATAGCACG 236
|.||.|.|| ||| |||.|||
BPUM_1108___c 195 --------------TGTACCTGA--------CGA-TGAACTG-------- 213
BSNT_01967___ 237 CTCTACAG----CACA----------TAGCCGAAAGA--AAGT------- 263
.|||||| |||| ||||| |.|.| ||||
BPUM_1108___c 214 -GCTACAGAAATCACAGATCAGCTTTTAGCC-ACACAACAAGTGACCGTC 261
BSNT_01967___ 264 -AAAA----------ATCAAAATTATAAACTGCTATAATATCACAATCAC 302
|||| |||.||||.||.||.||||||||..||||.||.||
BPUM_1108___c 262 CAAAAGAAGACTGTGATCCAAATCATCAATTGCTATAACGTCACGATTAC 311
BSNT_01967___ 303 TTTATCAGCTACAGACATC----ATGGCATCCGTTCAGCTCTTAACCCAA 348
.||||||| |..|||| |||...||.||.||..||.|.||.|||
BPUM_1108___c 312 ATTATCAG----ACGCATCTATTATGAACTCTGTCCAAATCCTCACTCAA 357
BSNT_01967___ 349 ACATT-AAT-CGCTCTTA--TAACAGAAGCTGACATTCTGTAG- 387
||||| ||| .|||.||| | |||||.|.|||||| |.|
BPUM_1108___c 358 ACATTGAATGTGCTATTAGTT----GAAGCCGGCATTCT-TTGA 396
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